BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0250.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309587|ref|YP_003773679.1| GntR family transcription regul... 484 e-138 gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 166 1e-42 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 75 6e-15 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 72 3e-14 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 70 1e-13 >gi|300309587|ref|YP_003773679.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 484 bits (1247), Expect = e-138, Method: Compositional matrix adjust. Identities = 239/239 (100%), Positives = 239/239 (100%) Query: 1 MASQKPTDSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALE 60 MASQKPTDSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALE Sbjct: 11 MASQKPTDSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALE 70 Query: 61 LEGRVEIRMGSGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAK 120 LEGRVEIRMGSGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAK Sbjct: 71 LEGRVEIRMGSGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAK 130 Query: 121 PRDIKALRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPIS 180 PRDIKALRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPIS Sbjct: 131 PRDIKALRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPIS 190 Query: 181 AKLLDHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTMSTMTRRDA 239 AKLLDHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTMSTMTRRDA Sbjct: 191 AKLLDHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTMSTMTRRDA 249 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 166 bits (421), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 133/226 (58%), Gaps = 4/226 (1%) Query: 11 RLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVEIRMG 70 RLY QI+D+LR ++ + F RLP ER LA QLGVSRPS+REAL+ALE+EG +E+RMG Sbjct: 10 RLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIEVRMG 69 Query: 71 SGVYLTQAAPPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKALRAI 130 SG+Y+ PP Q+E D +++ AR + EG + A + I A+ Sbjct: 70 SGIYVC---PPVQRERRI-DLSSEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAVEEA 125 Query: 131 YDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPISAKLLDHYEPE 190 Y M QAG P DR FHIR+A TGN VLV V +L+D R P+ +L H++ Sbjct: 126 YALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRLHSHFDGT 185 Query: 191 DSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTMSTMTR 236 W A+ EH ++EA+ R+ QA+AAM+RH+ ++ R + + R Sbjct: 186 RVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTRYSANLIR 231 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 74.7 bits (182), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 92/201 (45%) Query: 29 FTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVEIRMGSGVYLTQAAPPGQQEEPA 88 F +LP E LA+Q GVSR +REA+ L+ EG VE R GSGV++T+ A Sbjct: 27 FPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGSGVFVTEQAGIKPLRIDY 86 Query: 89 PDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKALRAIYDTMERECQAGQSPAATD 148 + ++ I+ R E + A A D++A+ A + + AG A D Sbjct: 87 TEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAALAQIGVDVAAGGDGVAAD 146 Query: 149 RDFHIRIARMTGNDVLVQTVARLYDERQDPISAKLLDHYEPEDSWLTALHEHREILEAIE 208 FH +A+ T N ++T+ L + + + ED EH I+EAI Sbjct: 147 VAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRGNEARYEDFSRQVREEHEAIVEAIR 206 Query: 209 ARDAIQAQAAMQRHLKMSLKR 229 A D + A+ A Q H+ + +R Sbjct: 207 AGDEMAARNAAQTHMFNAARR 227 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 72.4 bits (176), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 9/214 (4%) Query: 22 TVMYQPGFTSQG-RLPPERALAEQLGVSRPSIREALVALELEGRVEIRMGSGVYLTQAAP 80 T M G + G +LP E + + GVSR +REA+ L+ G VE R G G ++ +A Sbjct: 29 TAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRHGIGTFVLEAKK 88 Query: 81 PGQQE-EPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKALRAIYDTMERECQ 139 G +PA M + L+ ++ R E L A ++ +R D Q Sbjct: 89 GGNINIDPATITTMRDLLA-LLELRISLETETAGLAAARRTEEQLQEIREALDLFRANQQ 147 Query: 140 AGQSPAATDRDFHIRIARMTGNDVLVQTVARL---YDERQDPISAKLLDHYEPEDSWLTA 196 G D FH IA TGN ++ ++ L R+ +A+L ++ + S+L Sbjct: 148 GGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTAELA--HDQQASYLDR 205 Query: 197 LH-EHREILEAIEARDAIQAQAAMQRHLKMSLKR 229 + EH +I EAI DA A+AAM+ HL S +R Sbjct: 206 VQREHEDIYEAIARGDAEAARAAMRNHLTNSRER 239 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 70.1 bits (170), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 104/238 (43%), Gaps = 11/238 (4%) Query: 2 ASQKPTDSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALEL 61 A P R ++ + L + + T +LP E LA VSRP +R+AL L Sbjct: 22 AGLGPVRPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLRE 81 Query: 62 EGRVEIRMGSGVYLTQA-----APPGQQEEPAPDKEMGNSLSDIMGARAIFEGAIVALVA 116 + VE GSG Y+ + A PG + P+ +G+ ++ + R + E A+ A Sbjct: 82 DQLVESLRGSGTYVKEKPGLAPAQPGAE----PETRIGHIMNGLE-LRLVIEPECAAMAA 136 Query: 117 PLAKPRDIKALRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARL-YDER 175 +D+ + + + E + G D FH IA TGN VQ + L YD Sbjct: 137 LRRNRQDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVS 196 Query: 176 QDPISAKLLDHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTMST 233 + L H P A+ EHR+I E I +DA A+ AM+ H++ + R ++ Sbjct: 197 HAVNMLRHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIENARTRMFNS 254 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.131 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 673,616 Number of extensions: 25845 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 12 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)