BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0249.p
         (60 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1 sub...   127   2e-31
gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1 sub...   112   5e-27

>gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1
           subfamily [Herbaspirillum seropedicae SmR1]
          Length = 517

 Score =  127 bits (319), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1   LWTRQAYVEEGQSFPDPRERGLEISPKDIQWQWLDQANLPLPSGRKDIIIRNFSPAVSTN 60
           LWTRQAYVEEGQSFPDPRERGLEISPKDIQWQWLDQANLPLPSGRKDIIIRNFSPAVSTN
Sbjct: 458 LWTRQAYVEEGQSFPDPRERGLEISPKDIQWQWLDQANLPLPSGRKDIIIRNFSPAVSTN 517


>gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1
           subfamily [Herbaspirillum seropedicae SmR1]
          Length = 518

 Score =  112 bits (280), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/56 (92%), Positives = 53/56 (94%)

Query: 1   LWTRQAYVEEGQSFPDPRERGLEISPKDIQWQWLDQANLPLPSGRKDIIIRNFSPA 56
           LWTRQAYVEEGQSFPDPRERGL+ISPKDIQWQWLDQAN PLPSGRKDI IRNF PA
Sbjct: 456 LWTRQAYVEEGQSFPDPRERGLDISPKDIQWQWLDQANQPLPSGRKDITIRNFDPA 511


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.135    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 227,016
Number of extensions: 8087
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 2
Length of query: 60
Length of database: 1,619,870
Length adjustment: 33
Effective length of query: 27
Effective length of database: 1,463,615
Effective search space: 39517605
Effective search space used: 39517605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)