BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0241.p (167 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310455|ref|YP_003774547.1| AsnC family transcription regul... 156 9e-40 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 99 1e-22 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 96 1e-21 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 95 3e-21 gi|300312130|ref|YP_003776222.1| glutamate uptake transcription ... 91 5e-20 >gi|300310455|ref|YP_003774547.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 156 bits (394), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 75/151 (49%), Positives = 104/151 (68%) Query: 7 IDRTDIKILEHLQREGRCSNVELAEAINLSPSPCLTRTKRLEETGVIASYAAQVALDKLG 66 +DR D++IL HLQ+ R +NV LA+A+ LSPSPCL R KRLE+ G I+ Y A + L+KL Sbjct: 9 LDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEKLA 68 Query: 67 SHVVVFSEITLSSHRPADFRKFEQGAARYAEIVECYNVSGGYDYLLKIISPTVGMFQELM 126 +VF+E+TLS HR DF KFE EI+EC+ VSGGYDYLLK ++ +V +Q ++ Sbjct: 69 DVQIVFTEVTLSDHRREDFAKFESTIRNVDEIIECHLVSGGYDYLLKFMTRSVVHYQSVI 128 Query: 127 ERLLEDEIGIEKFASRIVLRHPYERRAEPVE 157 E LLE + IEK+ S IV++ P+ + P+E Sbjct: 129 ESLLEQNLRIEKYFSYIVIKSPFVKHHYPLE 159 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 99.4 bits (246), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 76/124 (61%) Query: 7 IDRTDIKILEHLQREGRCSNVELAEAINLSPSPCLTRTKRLEETGVIASYAAQVALDKLG 66 +D+ KIL LQ +GR SNV+LA +NLSP+ CL R ++L+E G I YAAQ+ + L Sbjct: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 Query: 67 SHVVVFSEITLSSHRPADFRKFEQGAARYAEIVECYNVSGGYDYLLKIISPTVGMFQELM 126 ++VF E+ L P F +F++ EI+EC+ V+GG+DYL+K + ++E + Sbjct: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 Query: 127 ERLL 130 + L Sbjct: 124 GKSL 127 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 87/151 (57%) Query: 7 IDRTDIKILEHLQREGRCSNVELAEAINLSPSPCLTRTKRLEETGVIASYAAQVALDKLG 66 +D+ D +IL LQ++GR S EL E + LS +PC+ R +R+E GVI Y A+V + LG Sbjct: 11 LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESLG 70 Query: 67 SHVVVFSEITLSSHRPADFRKFEQGAARYAEIVECYNVSGGYDYLLKIISPTVGMFQELM 126 + ++VF EITL+ F +F + R E+ EC+ VSG +DYL+K + +++L+ Sbjct: 71 ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLL 130 Query: 127 ERLLEDEIGIEKFASRIVLRHPYERRAEPVE 157 +L G + S +V+ E A P++ Sbjct: 131 GDILLQLPGAAQSKSYVVMEEIKETLALPLD 161 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 94.7 bits (234), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 77/149 (51%) Query: 7 IDRTDIKILEHLQREGRCSNVELAEAINLSPSPCLTRTKRLEETGVIASYAAQVALDKLG 66 +D TD++IL LQ SN+ELA INLSPSP L R KRLE G+I+ Y A LG Sbjct: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 Query: 67 SHVVVFSEITLSSHRPADFRKFEQGAARYAEIVECYNVSGGYDYLLKIISPTVGMFQELM 126 V VF ++ L +FE + + E++E Y ++G DYLL+I+ P + + + Sbjct: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 Query: 127 ERLLEDEIGIEKFASRIVLRHPYERRAEP 155 L GI+ S L+ + A P Sbjct: 123 VDHLTKIPGIKNIRSSFALKQIKYKTALP 151 >gi|300312130|ref|YP_003776222.1| glutamate uptake transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 90.9 bits (224), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 47/124 (37%), Positives = 69/124 (55%) Query: 7 IDRTDIKILEHLQREGRCSNVELAEAINLSPSPCLTRTKRLEETGVIASYAAQVALDKLG 66 IDRTD +ILE LQ + + E+AE +NLS +PC R +RLE GVI + +KL Sbjct: 2 IDRTDRRILEILQEDSTRAVAEIAECVNLSTTPCWRRIQRLEAEGVIKRRVVLLDAEKLN 61 Query: 67 SHVVVFSEITLSSHRPADFRKFEQGAARYAEIVECYNVSGGYDYLLKIISPTVGMFQELM 126 V V EI H + +KF E+VE + +SG DY+LK++ P +G + + Sbjct: 62 VSVTVLVEIKTRQHSASWLKKFRDVVTCIPEVVEVHRMSGHIDYMLKVMVPNIGAYDSVY 121 Query: 127 ERLL 130 +RL+ Sbjct: 122 KRLI 125 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 501,271 Number of extensions: 19128 Number of successful extensions: 46 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 9 Length of query: 167 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 88 Effective length of database: 1,245,805 Effective search space: 109630840 Effective search space used: 109630840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)