BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0238.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310462|ref|YP_003774554.1| HAD superfamily haloalkanoic ac...   236   1e-63

>gi|300310462|ref|YP_003774554.1| HAD superfamily haloalkanoic acid
           dehalogenase [Herbaspirillum seropedicae SmR1]
          Length = 222

 Score =  236 bits (601), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 140/219 (63%)

Query: 3   FKPKFISFDCYGTLINFEMGPTARTLFADRVDEKRMPAFLDSFRFYRLDEVLGAWKPFFD 62
           FKPKFI+FDCYGTL  F+M  TA+ ++ADRV  + MP FL  F  YRLDEVL  WKP+  
Sbjct: 4   FKPKFITFDCYGTLTRFQMSETAQKIYADRVSAEDMPFFLRQFAAYRLDEVLDQWKPYEQ 63

Query: 63  VVDNAIRRACHAHGVECRASDAQALYAAIPTWQPHPHVVETLEKIAPHIPLVILSNSMID 122
           V  NAI R C   G++    +  A Y A+PTW PH  V   L K+A   PLVI SN+   
Sbjct: 64  VCKNAITRTCARWGIQTNDEETGAFYKAVPTWGPHADVPAGLSKVAKEFPLVIFSNADDS 123

Query: 123 LIPHSVAHLKAPFHSVFTAEEAQAYKPRGQAFEYMFDQLGCGPQEMVHCSSSFRYDLMTA 182
            I H+V  L A FH VFTA++AQAYKPR +AFEYM D L C P++++H SSS RYDLM A
Sbjct: 124 QIMHNVEQLGAAFHKVFTAQQAQAYKPRLRAFEYMLDNLNCNPEDVLHVSSSLRYDLMPA 183

Query: 183 SDLGFMGKAFIDRNHEPSFDGYGVNRLTDFRQLATLVGL 221
           +D+G   K F+ R HEPS   YG   + D   L  ++GL
Sbjct: 184 ADMGIKNKVFVARGHEPSTPFYGYTEIKDISGLPGVLGL 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 696,608
Number of extensions: 27954
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)