BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0237.p (425 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [H... 862 0.0 gi|300310459|ref|YP_003774551.1| glycine/D-amino acid oxidase [H... 455 e-129 gi|300310497|ref|YP_003774589.1| glycine/D-amino acid oxidase [H... 178 9e-46 gi|300310468|ref|YP_003774560.1| glycine/D-amino acid oxidase [H... 77 2e-15 >gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 425 Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/425 (98%), Positives = 423/425 (99%) Query: 1 MMQLKSYWLDTSPAFVSQTRTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADIV 60 MMQLKSYWLDTSPAFVSQT+TLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADIV Sbjct: 1 MMQLKSYWLDTSPAFVSQTQTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADIV 60 Query: 61 GGAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFA 120 GGAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFA Sbjct: 61 GGAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFA 120 Query: 121 RHGKLKLAAKPEHVDKLARSQELLARHVDGDTRLLSRAQLREELGSDRYHGGLLMHKSAG 180 RHGKLKLAAKPEHVDKLARSQELLARHVDGDTRLLSRAQLR+ELGSDRYHGGLLMHKSAG Sbjct: 121 RHGKLKLAAKPEHVDKLARSQELLARHVDGDTRLLSRAQLRDELGSDRYHGGLLMHKSAG 180 Query: 181 MHVGRYVRGLAQAAQRRGALYLERTPVLGIEAKNGRYAVRTSAGVVHAGQVLLASGISQV 240 MHVGRYVRGLAQAAQRRGALYLERTPVLGIEAKNGRYAVRTSAGV+HAGQVLLASGISQV Sbjct: 181 MHVGRYVRGLAQAAQRRGALYLERTPVLGIEAKNGRYAVRTSAGVLHAGQVLLASGISQV 240 Query: 241 GPFGWIRRRIVPVGAFLIVTEPLPDALLKQLLPTQRMYTDTKNFVNYFRATPDQRLLFGG 300 GPFGWIRRRIVPVGAFLIVTEPLP ALLKQLLPTQRMYTDTKNFVNYFRATPDQRLLFGG Sbjct: 241 GPFGWIRRRIVPVGAFLIVTEPLPGALLKQLLPTQRMYTDTKNFVNYFRATPDQRLLFGG 300 Query: 301 RARFAVSNPQSDARSGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAGQRDGLY 360 RARFA SNPQSDARSGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAGQRDGLY Sbjct: 301 RARFAASNPQSDARSGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAGQRDGLY 360 Query: 361 YSMGYSGHGTHMATLMGSMMAEIMDGHADLNPWKDFDWPAIPGHFGKPWFLPFVGAWYRL 420 YSMGYSGHGTHMATLMGSMMAEIMDGHA+LNPWKDFDWPAIPGHFGKPWFLPFVGAWYRL Sbjct: 361 YSMGYSGHGTHMATLMGSMMAEIMDGHAELNPWKDFDWPAIPGHFGKPWFLPFVGAWYRL 420 Query: 421 KDRLQ 425 KDRLQ Sbjct: 421 KDRLQ 425 >gi|300310459|ref|YP_003774551.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 430 Score = 455 bits (1170), Expect = e-129, Method: Compositional matrix adjust. Identities = 243/430 (56%), Positives = 305/430 (70%), Gaps = 8/430 (1%) Query: 2 MQLKSYWLDTSPAFVSQTRTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADI-V 60 M+L+SYW D++P ++S TR LP DV +VGGG TG +AALALAR+GA VVV EA V Sbjct: 1 MKLESYWTDSAPLYISPTRDLP-AQVDVAIVGGGFTGLSAALALARRGASVVVLEAGPHV 59 Query: 61 GGAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFA 120 ASGRNGG NNG A DYA L+ ++GVE A Y A+D VDTV RLV+EE IDC F Sbjct: 60 AAEASGRNGGHVNNGLAVDYAELAAKVGVERARAWYHAYDDAVDTVARLVQEEQIDCDFL 119 Query: 121 RHGKLKLAAKPEHVDKLARSQE-LLARHVDGDTRLLSRAQLREELGSDRYHGGLLMHKSA 179 RHGKLK+A +P +D L RS + L+A VD D +L +++ E+ S+R+HGGLL +S Sbjct: 120 RHGKLKMATRPYQMDALQRSADRLIADGVDLDVEILDAQRVQAEVQSERFHGGLLYKRSG 179 Query: 180 GMHVGRYVRGLAQAAQRRGALYLERTPVLGIE--AKNGRYAVRTSAGVVHAGQVLLASGI 237 MH+GR+ GLA AA+R+GA T V +E + + + T+ G V A QVLLA+G Sbjct: 180 QMHMGRFAYGLAMAAERQGAAIHTGTEVRRLERIGQTHGHRLHTTRGAVLARQVLLATGA 239 Query: 238 SQ---VGPFGWIRRRIVPVGAFLIVTEPLPDALLKQLLPTQRMYTDTKNFVNYFRATPDQ 294 S+ G FGW+RRRIVP+G+F++VTEPL LL QR YT N +YFR TPD Sbjct: 240 SRHGAYGSFGWLRRRIVPIGSFIVVTEPLGAQRAATLLKHQRTYTTVANIHHYFRMTPDT 299 Query: 295 RLLFGGRARFAVSNPQSDARSGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAG 354 RL+FGGRARFA+S+PQSDA SGE+LR + E FP L Q R+DYCWGG+VD+T DRLP+AG Sbjct: 300 RLVFGGRARFAISSPQSDAASGEVLRRGLHETFPQLGQVRLDYCWGGLVDVTRDRLPQAG 359 Query: 355 QRDGLYYSMGYSGHGTHMATLMGSMMAEIMDGHADLNPWKDFDWPAIPGHFGKPWFLPFV 414 +RDGLYYSMGYSGHGT M+ MG MA++M G A NPW++ +WPAIPGHFG PWFLP V Sbjct: 360 ERDGLYYSMGYSGHGTQMSVHMGQCMAKVMAGDALANPWREREWPAIPGHFGAPWFLPLV 419 Query: 415 GAWYRLKDRL 424 G +YRLKD+L Sbjct: 420 GLYYRLKDKL 429 >gi|300310497|ref|YP_003774589.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 433 Score = 178 bits (451), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 136/428 (31%), Positives = 204/428 (47%), Gaps = 16/428 (3%) Query: 6 SYWLDTSPAFVSQTRTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADIVGGAAS 65 S W T+ F DV +VG G TG + AL LA+ G V V +A G AS Sbjct: 12 SLWAATAGEFSGAPPLQASARYDVAIVGAGYTGLSTALHLAQAGVSVCVLDAHAPGWGAS 71 Query: 66 GRNGGMCNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFARHGKL 125 GRNGG G D L G A+ L A + DTV L+ I+C R G + Sbjct: 72 GRNGGQVIPGLKYDPDQLRVMFGSAVADPLIAAIGSAADTVFDLIARHGIECEAQRAGWI 131 Query: 126 KLAAKPEHVDKLARSQELLARHVDGD---TRLLSRAQLREELGSDRYHGGLLMHKSAGMH 182 +P H K+ R+ E AR + +L+ A++ +G+ Y GG ++ +H Sbjct: 132 ----QPTHSPKMMRALEARARQWMAEGAPAQLMDGAEVTRRIGTGAYVGGWKDERAGSLH 187 Query: 183 VGRYVRGLAQAAQRRGALYLERTPVLGIEAKNGRYAVRTSAGV----VHAGQVLLASGIS 238 +Y RGLAQAAQR G + T V +E + G + + +G + A +V+LA+ Sbjct: 188 PLKYCRGLAQAAQRLGVVIHGDTRVTRLERRQGGWRLHGPSGEQGPHIDAERVVLATNGY 247 Query: 239 QVGPFGWIRRRIVPVGAFLIVTEPLPDALLKQLLPTQRMYTDTKNFVNYFRATPDQRLLF 298 + +R+ ++ +F++ T PLP AL +LP + +D++ + Y+R RLL Sbjct: 248 TDDLWPHLRQSVIAANSFIVATRPLPPALGASILPGGEVTSDSRRLLLYYRRDAQGRLLM 307 Query: 299 GGRARFAVSNPQSDARSGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAGQ-RD 357 GGR F PQ A + R+ L +FP LA +Y W G V +T D LP + Sbjct: 308 GGRGPFG--EPQGPADFAHLERSVAL-LFPQLAGVEYEYRWSGRVAITRDFLPHVHEPAP 364 Query: 358 GLYYSMGYSGHGTHMATLMGSMMAEIMDGHADLN-PWKDFDWPAIPGHFGKPWFLPFVGA 416 GL ++GY+G G MAT+MG +A+ + G A P+ IP H + +++ A Sbjct: 365 GLSIALGYNGRGIAMATMMGQRLAQRLIGPAGTAFPFPVSTIAPIPLHGLQRFYIAAGVA 424 Query: 417 WYRLKDRL 424 WY + DR Sbjct: 425 WYSVLDRF 432 >gi|300310468|ref|YP_003774560.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 441 Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 108/439 (24%), Positives = 167/439 (38%), Gaps = 81/439 (18%) Query: 12 SPAFVS-QTRTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADIVGGAASGRNGG 70 SP V Q+ T+P + DVVV+GGGI G A LA++G V V E +G S RN G Sbjct: 2 SPPLVQVQSPTIPPASADVVVIGGGIIGIFTAYFLAKRGISVAVVEKGRIGAEQSSRNWG 61 Query: 71 MCNNGFAQDYATLSQRLGVEWANRLYRAF---DAGVDTVERLVREESIDCSFARHGKLKL 127 C NR R +D E+ E D F R G L L Sbjct: 62 WCRQ-----------------QNRDARELPMATKSIDLWEQFSAETGEDTGFNRCGLLYL 104 Query: 128 AAKPEHVDKLARSQELLARHVDGDTRLLSRAQLRE--ELGSDRYHGGLLMHKSAGMHVGR 185 + E + + A + A+ T +L Q E + GG+ G+ Sbjct: 105 SNDEEEIARWAAWGD-FAKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGK 163 Query: 186 YVRGLAQAAQRRGALYLERTPVLGIEAKNGRYA-VRTSAGVVHAGQVLLASG------IS 238 +A+A + G +++ GI+ + GR + V T AGV+ ++A G Sbjct: 164 AAPAVARAIMKLGGHVIQQCAARGIDTEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCH 223 Query: 239 QVG---PFGWIRRRIVPVGAFLIVTEPLPDALLKQLLPTQRMYTDTKNF----------- 284 Q+G P +R+ I+ V + PLP AL + R + Sbjct: 224 QLGIRFPQASVRQSIMSVAP---MEAPLPGALYTSGVAVTRRSDGSYALAISGRARVDPT 280 Query: 285 VNYFRATPDQRLLFGGR------------------------------ARFAVSNPQSDAR 314 + + R +P +F R R + + +D Sbjct: 281 MQFLRFSPQFLPMFAKRWRSLSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADPA 340 Query: 315 SGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAG---QRDGLYYSMGYSGHGTH 371 S + +E+ P LAQ ++ + W G VD T D +P G Q GL + G+SGHG Sbjct: 341 SIRATHRRAVELLPQLAQAKVTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFG 400 Query: 372 MATLMGSMMAEIMDGHADL 390 + G ++A++ G A + Sbjct: 401 IGPGAGHLIADLASGAAPI 419 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,362,234 Number of extensions: 57761 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 4 Length of query: 425 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 337 Effective length of database: 1,203,190 Effective search space: 405475030 Effective search space used: 405475030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)