BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0236.p (597 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 1175 0.0 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 445 e-126 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 444 e-125 gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 436 e-123 gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis tra... 263 3e-71 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 1175 bits (3039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/597 (99%), Positives = 595/597 (99%) Query: 1 MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA 60 MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA Sbjct: 1 MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA 60 Query: 61 GKSKMIASLEDISLTSDPDPMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR 120 GKSKMIASLEDISLTSDPD MLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR Sbjct: 61 GKSKMIASLEDISLTSDPDAMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR 120 Query: 121 PWYKGVLQAGKPVALPYVSTSGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSIHP 180 PWYKGVLQAGKPVALPYVSTSGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSIHP Sbjct: 121 PWYKGVLQAGKPVALPYVSTSGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSIHP 180 Query: 181 TPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGREKL 240 TPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGREKL Sbjct: 181 TPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGREKL 240 Query: 241 VRVQAVPGTDWNIVVAIDQQEASAGVRSLLASSLVSLVAVVIAASLIGAAVTATAFRRLG 300 VRVQAVPGTDWNIVVAIDQQEASAGVR+LLASSL+SLVAVVIAASLIGAAVTATAFRRLG Sbjct: 241 VRVQAVPGTDWNIVVAIDQQEASAGVRALLASSLLSLVAVVIAASLIGAAVTATAFRRLG 300 Query: 301 QISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRVAS 360 QISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRVAS Sbjct: 301 QISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRVAS 360 Query: 361 DEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQGG 420 DEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQGG Sbjct: 361 DEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQGG 420 Query: 421 KVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVVAH 480 KVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVVAH Sbjct: 421 KVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVVAH 480 Query: 481 EVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTADVQSAIADIAR 540 EVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHT DVQSAIADIAR Sbjct: 481 EVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTDDVQSAIADIAR 540 Query: 541 TTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRID 597 TTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRID Sbjct: 541 TTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRID 597 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 445 bits (1144), Expect = e-126, Method: Compositional matrix adjust. Identities = 273/599 (45%), Positives = 380/599 (63%), Gaps = 7/599 (1%) Query: 1 MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA 60 MLSSLRAR+I +L+V +++I +AAN R A + HAA I +W+ Sbjct: 1 MLSSLRARLIFICVLIVALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWVR 60 Query: 61 GKSKMIASLEDISLTSDPDPMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR 120 K + +++ SD P++ Q AG F D +GYPDKR +PA YDPT R Sbjct: 61 SKRVVTGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKR--MLALHPMPAGYDPTAR 118 Query: 121 PWYKGVLQAGKPV-ALPYV-STSGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSI 178 PWYK ++AGKPV PYV +T+G L+V A PV L+AV+ DV LD+VV + I Sbjct: 119 PWYKQAVEAGKPVLTAPYVDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGI 178 Query: 179 HPTPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGRE 238 PTPSSF +V + G II HP+ +L K S L S ++A G + G Sbjct: 179 KPTPSSFAFIVGKDGVIITHPNKELALKPVSSLDQTLSAQSLAGMKQGGSAT---IGGIR 235 Query: 239 KLVRVQAVPGTDWNIVVAIDQQEASAGVRSLLASSLVSLVAVVIAASLIGAAVTATAFRR 298 L+ Q + TDW++VVA+D +EA+ + +L+ S V V ++A++++ + RR Sbjct: 236 YLLFTQPIANTDWSLVVALDYREATHAIGALMTLSTVLAVLAIVASAILLSYTITRLLRR 295 Query: 299 LGQISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRV 358 LG + AM I SG GDLT+RL G+DE+A I+++FN F K+ + DIR A E+V+V Sbjct: 296 LGVVRNAMEEIASGDGDLTRRLDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVKV 355 Query: 359 ASDEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQ 418 +S EIA+ N DLS RTE A SLE+TA++M E+++TV ++A A +A+Q + +A+ +A Sbjct: 356 SSSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAVH 415 Query: 419 GGKVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVV 478 GG+VV VATM I + S +I DIISVIDGIAFQTNILALNAAVE+ARAGEQGRGFAVV Sbjct: 416 GGQVVGQVVATMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 475 Query: 479 AHEVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTADVQSAIADI 538 A EVR+LAQRSA AA+E+K L++ ++ +V GSQ V QAG TM ++V+ V + +I Sbjct: 476 ASEVRSLAQRSATAAKEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEI 535 Query: 539 ARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRID 597 + + EQ+ GI EV AV Q+D QQNAALVE++AAA+ +LQ+QA LAA +A F++D Sbjct: 536 SAASQEQSSGITEVGNAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKLD 594 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 444 bits (1141), Expect = e-125, Method: Compositional matrix adjust. Identities = 265/597 (44%), Positives = 372/597 (62%), Gaps = 3/597 (0%) Query: 3 SSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLAGK 62 +SLR R+I +V+ ++L N+L AR + D + AA I +W K Sbjct: 23 TSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSK 82 Query: 63 SKMIASLEDISLTSDPDPMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTRPW 122 ++ S+++ + +DP P +K Q AGGF +GY DK A F+ + YDPT RPW Sbjct: 83 KLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPW 142 Query: 123 YKGVLQAGKPV-ALPYVSTS-GLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSIHP 180 Y+ + +PV PY S S G LLV A+ V +DG + AV DV LD+VV ++ +I P Sbjct: 143 YQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKP 202 Query: 181 TPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGREKL 240 TP+S+ L + G+IIAHP+ +LR K ++L + + A + +DGR ++ Sbjct: 203 TPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQM 262 Query: 241 VRVQAVPGTDWNIVVAIDQQEASAGVRSLLASSLVSLVAVVIAASLIGAAVTATAFRRLG 300 + V V GTDW +VVA+D+ +A A + ++L SS V V V + A+L+ A+ + RL Sbjct: 263 LFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLT 322 Query: 301 QISAAMTAIGSGSGDLTQRLPDHGR-DEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRVA 359 + A+ I G GDLT+RL HGR DE+ I +FN FV K++ VM DIRDA T+ A Sbjct: 323 VVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAA 382 Query: 360 SDEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQG 419 S +IA+ N DLS RTES A+SLEQTAA+M +++++V +A A +A+Q S +A+ IA+QG Sbjct: 383 SRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQG 442 Query: 420 GKVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVVA 479 G +V V TM I S +I DIISVIDGIAFQTNILALNAAVE+ARAGEQGRGFAVVA Sbjct: 443 GTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 502 Query: 480 HEVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTADVQSAIADIA 539 EVR+LAQRSA AA+E+K L+ ++ +V AG V QAG T+R +V V +A+I Sbjct: 503 SEVRSLAQRSATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEIT 562 Query: 540 RTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRI 596 + EQ++GI + N AV +D QQNAALVE++AA + +LQ+QA LA +A FR+ Sbjct: 563 AASREQSQGINQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALFRL 619 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 436 bits (1121), Expect = e-123, Method: Compositional matrix adjust. Identities = 252/598 (42%), Positives = 386/598 (64%), Gaps = 2/598 (0%) Query: 1 MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA 60 M +S++AR++ I L+I+S+ + ++ I + + A + + + + I +W+A Sbjct: 1 MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA 60 Query: 61 GKSKMIASLEDISLTSDPDPMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR 120 ++ M + D L +DP ++K +Q +GGFY +G DK A + +PA YDPT R Sbjct: 61 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR 120 Query: 121 PWYKGVLQAGKPV-ALPYVST-SGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSI 178 PWYK + AGKPV PY + +V+ PVM++G VV + LD V + ++SI Sbjct: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSI 180 Query: 179 HPTPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGRE 238 HPTP+SF LV++ G ++AHPD Q K A E E + + ++++G Sbjct: 181 HPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAA 240 Query: 239 KLVRVQAVPGTDWNIVVAIDQQEASAGVRSLLASSLVSLVAVVIAASLIGAAVTATAFRR 298 KLV+ + GT+W +++A+D+ + +AG+R+ S+L++LV V + A+ I + +T F+R Sbjct: 241 KLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQR 300 Query: 299 LGQISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRV 358 L ++ AM + SG+GDLT RL + G DEV I++SFN FV ++ +++D+R + +TV++ Sbjct: 301 LSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKI 360 Query: 359 ASDEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQ 418 +S EIA N DLS RTE A +LE+TA++M E+++TV +++ A A++ + A+ IA+Q Sbjct: 361 SSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQ 420 Query: 419 GGKVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVV 478 GG+VV + V+TM I S QI DII+VIDGIAFQTNILALNAAVE+ARAGEQGRGFAVV Sbjct: 421 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 480 Query: 479 AHEVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTADVQSAIADI 538 A EVR+LAQRSA AA+E+K L+++++S+VA G V QAG TM IV DV +++I Sbjct: 481 ASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSEI 540 Query: 539 ARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRI 596 A + EQ GIQEVN A+ +D QQNAALVE++AAA+ +LQ +A+ L+ + F++ Sbjct: 541 AHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM 598 >gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 657 Score = 263 bits (672), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 176/375 (46%), Positives = 244/375 (65%), Gaps = 10/375 (2%) Query: 226 GQPPVHIVVDGREKLVRVQAVPGTDWNIV--VAIDQ--QEASAGVRSLLASSLVSLVAVV 281 G P + DGR+K++ PG W I A+D+ +E S+ +R+L + L+ + Sbjct: 289 GSLP-YTAADGRKKILAFTYYPGWHWVIAGEAAVDEITREVSS-MRNLYIG--LGLLFLA 344 Query: 282 IAASLIGAAVTATAFRRLGQISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAK 341 + A+++ V R L + A I SG DLT RL H DE+ + +FN Sbjct: 345 VLAAILTVMVNRMVSRPLDAVCQAADRIASG--DLTTRLHVHSSDEIGRLMGAFNGISMG 402 Query: 342 LQSVMRDIRDAGETVRVASDEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATA 401 L V+ +R E + A+ EIA+ N +LSVRTE A +LE+TA++M E+++TV ++A Sbjct: 403 LSEVVSSVRAGTEEINTAASEIASGNLNLSVRTEQQAGALEETASAMEELTSTVKQNAAN 462 Query: 402 AHEADQRSSAATGIASQGGKVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNA 461 A +AD+ SSAA+ +AS GG+VV V TM I S +I DIISVIDGIAFQTNILALNA Sbjct: 463 AEQADELSSAASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQTNILALNA 522 Query: 462 AVESARAGEQGRGFAVVAHEVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTM 521 AVE+ARAGEQGRGFAVVA EVR LAQRSA AA+E+K+L++A++ VA G Q V QAG TM Sbjct: 523 AVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGGQLVTQAGNTM 582 Query: 522 RDIVTHTADVQSAIADIARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQ 581 D+V+ V + I++I + EQ+ GI ++N+A+ Q+D QQNAALVE++AAA+ +LQ Sbjct: 583 NDVVSSVQRVSTVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAAAAAQSLQ 642 Query: 582 QQANVLAATIARFRI 596 QQA LAA ++ FRI Sbjct: 643 QQAERLAAAVSTFRI 657 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.128 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,539,240 Number of extensions: 60189 Number of successful extensions: 589 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 412 Number of HSP's successfully gapped: 71 Length of query: 597 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 506 Effective length of database: 1,188,985 Effective search space: 601626410 Effective search space used: 601626410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)