BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0226.p (1047 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein... 2117 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 227 3e-60 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 226 8e-60 gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 195 2e-50 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 191 4e-49 >gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein [Herbaspirillum seropedicae SmR1] Length = 1047 Score = 2117 bits (5485), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1044/1047 (99%), Positives = 1045/1047 (99%) Query: 1 MSAPGRFNLSAWTLQHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGA 60 MSAPGRFNLSAWTLQHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGA Sbjct: 1 MSAPGRFNLSAWTLQHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGA 60 Query: 61 TARQVQEQITDRIARKLQETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQTWYQVRKK 120 TARQVQEQITDRIARKLQETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQTWYQVRKK Sbjct: 61 TARQVQEQITDRIARKLQETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQTWYQVRKK 120 Query: 121 VGDMAATLPQGVKGPYFNDEFGDVYTNIYALAGDGFSPAQLRDYADQLRGELLHVPGVAK 180 VGDMAATLPQGVKGPYFNDEFGDVYTNIYALAGDGFSPAQLRDYADQLRGELLHVPGVAK Sbjct: 121 VGDMAATLPQGVKGPYFNDEFGDVYTNIYALAGDGFSPAQLRDYADQLRGELLHVPGVAK 180 Query: 181 IDYFGERNEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGNDRVYVRPTGQ 240 IDYFGERNEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGNDRVYVRPTGQ Sbjct: 181 IDYFGERNEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGNDRVYVRPTGQ 240 Query: 241 FDNLRALEEKIIQINNRSFRLGDIATITRGYDEPQEQAMRTNGQPVLGIGVTMQPGGDVI 300 FDNLRALEEKIIQINNRSFRLGDIATITRGYDEPQEQAMR NGQPVLGIGVTMQPGGDVI Sbjct: 241 FDNLRALEEKIIQINNRSFRLGDIATITRGYDEPQEQAMRANGQPVLGIGVTMQPGGDVI 300 Query: 301 RLGKALDARTEELRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSLG 360 RLGKALDARTEELRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSLG Sbjct: 301 RLGKALDARTEELRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSLG 360 Query: 361 IRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLE 420 IRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLE Sbjct: 361 IRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLE 420 Query: 421 QGWNRRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSW 480 QGWNRRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSW Sbjct: 421 QGWNRRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSW 480 Query: 481 LAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRSVAWC 540 LAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRSVAWC Sbjct: 481 LAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRSVAWC 540 Query: 541 VAFRGRVVIATTVLFIGSLAAFALVPQQFFPSSDRPELLIDLHLPERASFEATQREAVRM 600 VAFRGRVVIATTVLFIGSLAAFALVPQQFFPSSDRPELLIDLHLPERASFEATQREAVRM Sbjct: 541 VAFRGRVVIATTVLFIGSLAAFALVPQQFFPSSDRPELLIDLHLPERASFEATQREAVRM 600 Query: 601 EALLKDRPQIDHYVSFVGVGAPRFYLPLDQQLASPNFAQFVVTAKSVEDREALARALEEP 660 EALLKDRPQIDHYVSFVGVGAPRFYLPLDQQLASPNFAQFVVTAKSVEDREALARALEEP Sbjct: 601 EALLKDRPQIDHYVSFVGVGAPRFYLPLDQQLASPNFAQFVVTAKSVEDREALARALEEP 660 Query: 661 LRRQFSGARTRLTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAEMRKESRATNIQFD 720 LRRQFSG RTRLTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAEMRKESRATNIQFD Sbjct: 661 LRRQFSGVRTRLTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAEMRKESRATNIQFD 720 Query: 721 WDEPAQRSVSFEIDQKRAAQLGLSSQQISNFLAMQLSGYTITQYRERDKLISVDLRAPRS 780 WDEPAQRSVSFEIDQKRAAQLGL+SQQISNFLAMQLSGYTITQYRERDKLISVDLRAPRS Sbjct: 721 WDEPAQRSVSFEIDQKRAAQLGLTSQQISNFLAMQLSGYTITQYRERDKLISVDLRAPRS 780 Query: 781 ERVDPARLATLSMPTANGPVPLATLGQFNNTLEYGVIWERNRQPTITVLADVRPGVQGID 840 ERVDPARLATLSMPTANGPVPLATLGQFNNTLEYGVIWERNRQPTITVLADVRPGVQGID Sbjct: 781 ERVDPARLATLSMPTANGPVPLATLGQFNNTLEYGVIWERNRQPTITVLADVRPGVQGID 840 Query: 841 VTNDVNQKLNALRAELPVGYRIDVGGPVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSF 900 VTNDVNQKLNALRAELPVGYRIDVGGPVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSF Sbjct: 841 VTNDVNQKLNALRAELPVGYRIDVGGPVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSF 900 Query: 901 GRTMMVVMTAPLGLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAA 960 GRTMMVVMTAPLGLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAA Sbjct: 901 GRTMMVVMTAPLGLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAA 960 Query: 961 GRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGGITIATILTLFY 1020 GRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGGITIATILTLFY Sbjct: 961 GRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGGITIATILTLFY 1020 Query: 1021 LPALYALCYRVKPDETHHRDTAAQGSH 1047 LPALYALCYRVKPDETHHRDTAAQGSH Sbjct: 1021 LPALYALCYRVKPDETHHRDTAAQGSH 1047 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 227 bits (579), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 264/1078 (24%), Positives = 474/1078 (43%), Gaps = 102/1078 (9%) Query: 22 FILALVTLL-GIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKLQET 80 ++LA+ +L G + + L S+ P +V+ +PGATA+ + + +T I +++ Sbjct: 13 WVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDSVTSLIEQEMNGA 72 Query: 81 PDVDFLRSYSRA-GQSQLFFTIKDTAPASQVPQTWYQVRKKVGDMAATLPQGV--KGPYF 137 + ++ S S+A GQ Q+ T +P + V+ ++ + A LP V +G Sbjct: 73 DGLQYIESQSQANGQVQITITF---SPETNPDLAAVDVQNRLKRVEARLPAAVTQQGVQV 129 Query: 138 NDEFGDVYTNIYALAGDG-FSPAQLRDY-ADQLRGELLHVPGVAKIDYFG-ERNEHIYID 194 + I + DG P L DY + + E+ VPGV + FG ER I+ID Sbjct: 130 TKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGTERAMRIWID 189 Query: 195 IGNARMTRLGISPQQLADAIGGQNAVVPGG----LITTGNDRV--YVRPTGQFDNLRALE 248 ++ L ++P + AI QNA+V GG L + G ++ V GQ + Sbjct: 190 --PNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQLTSPEQFG 247 Query: 249 EKIIQINNR--SFRLGDIATITRGYDEPQEQAMRTNGQPVLGIGVTMQPGGDVIRLGKAL 306 I++ N + RL D+A + G + + + R +G+P IGV + P + + A+ Sbjct: 248 NIILRANANGATVRLRDVARVEVG-GQSYDTSGRLDGKPSSFIGVQLSPTANALGTATAV 306 Query: 307 DARTEELRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSL-GIRTGM 365 + EEL K P G+ T V+ S+++ ++ + EA+ +V +V + L IR + Sbjct: 307 HKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQNIRYTI 366 Query: 366 VVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMA-VKLEQGWN 424 + I +P+ L T + LF ++ +++ +VLA+G+LVDDAI+ VE + + E+G + Sbjct: 367 IPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEEGLS 426 Query: 425 RRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIA-LLLSWLAA 483 A A + ++ TLV +A F+P+A G R F +S +A ++ S L A Sbjct: 427 PADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQ-FSLSMVASMVFSVLMA 485 Query: 484 VVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRS------- 536 L P L +LK E+ H H + + W R Sbjct: 486 FTLTPALCATILKPV------------------EKGHHHE--KKGFFGWFNRKFNSTASG 525 Query: 537 ----VAWCVAFRGRVVIATTVLFIGSLAAFALVPQQFFPSSDRPELLIDLHLPERASFEA 592 + + GR +I ++ + +P F P+ D+ ++ ++ LP AS Sbjct: 526 YQGIIGGMLNKAGRYMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSR 585 Query: 593 TQREAVRMEALLKDRPQIDHYV-----SFVGVG--APRFYLPL------DQQLASPNFAQ 639 T ++E P ++H + SF G G A + PL D+ ++ A Sbjct: 586 TTAVVKQIEEYYLKDPAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAG 645 Query: 640 FVVTAKSVEDREALARALEEPLRRQFSGARTRLTRLENGPPVGFP--VQFRISGEQIPKV 697 A S + ++A+ L P + A RL++ +G VQ R QI + Sbjct: 646 KAFGAFS-QIKDAIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQAR---NQILGM 701 Query: 698 RAIAEQVAAEMRKESRATNIQFDWDEPAQRSVSFEIDQKRAAQLGLSSQQISNFLAMQLS 757 A +V A +R E Q D ID+ +A LG+ I++ L+ L Sbjct: 702 -ASQSKVLAGVRPEGLEDAPQLQLD----------IDRDKANALGVPFSTINSVLSTALG 750 Query: 758 GYTITQYRERDKLISVDLRAPRSERVDPARLATLSMPTANGP-VPLA---TLGQFNNTLE 813 + + + V ++A R+ P L L ++G VP + T N ++ Sbjct: 751 SSYVNDFPNLGRQQRVIVQADAKRRLQPEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQ 810 Query: 814 YGVIWERNRQPTITVLADVRPGVQGIDVTNDVNQKLNALRAELPVGYRIDVGGPVEENAK 873 + N P + + PG T + ++ + A+LP G+ + G E Sbjct: 811 ---LIRYNGYPAMKIAGGAAPGRS----TGEAMAEMESFVAKLPPGFGFEWTGQSLEEKT 863 Query: 874 AQSSISAQMPLMVIAVLLLLMVQLQSFGRTMMVVMTAPLGLIGVVGALLLFGQPFGFVAM 933 + + A L +IAV L+L +S + V++ PLG++G + + L P Sbjct: 864 SGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVVPLGILGALLGVTLRAMPNDVYFK 923 Query: 934 LGTIAMLGIIMRNSVILVDQIEQDIAAGRGRFDAIVGATVRRFRPITLTAAAAVLALIPL 993 +G IA++G+ +N++++++ + A G+G +A + A RFRPI +T+ A +L ++PL Sbjct: 924 VGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPL 983 Query: 994 LRSNFFGP-----MATALMGGITIATILTLFYLPALYALCYRVKPDETHHRDTAAQGS 1046 ++ G + T +MGG+ AT+L +F +P + + ++ R A+ S Sbjct: 984 AIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFFVVVRKIFKGSERQRKFDAEHS 1041 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 226 bits (576), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 258/1044 (24%), Positives = 447/1044 (42%), Gaps = 81/1044 (7%) Query: 26 LVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKLQETPDVDF 85 + L G+ + S+L + P + I +PGAT + + + + I R+L ++ + Sbjct: 18 FIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDGVISLIERELSGVKNLLY 77 Query: 86 LRSYS-RAGQSQLFFTIKDTAPASQVPQTWYQVRKKVGDMAATLPQGVK--GPYFNDEFG 142 S + +G +Q+ T K P + V+ K+ + A LPQ V+ G Sbjct: 78 FESSADTSGTAQISVTFK---PGTDPELAQVDVQNKLKAIEARLPQTVRQNGVTVESAAS 134 Query: 143 DVYTNIYALAGDG-FSPAQLRDY-ADQLRGELLHVPGVAKIDYFG-ERNEHIYIDIGNAR 199 + + DG + +L DY A + EL + GV ++ FG E+ I++D + Sbjct: 135 SFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGAEQAMRIWLD--PFK 192 Query: 200 MTRLGISPQQLADAIGGQNA-VVPGGLITTGNDRVYVRPT---------GQFDNLRALEE 249 + G++ ++ AI QNA + PG L D VR GQ + Sbjct: 193 LNAYGLTVTDISTAISQQNAQIAPGRL----GDAPAVRGQQIAMPLTVQGQLQSPAQFAA 248 Query: 250 KIIQINNRSFR--LGDIATITRGYDEPQEQAMRTNGQPVLGIGVTMQPGGDVIRLGKALD 307 +++ R LGD+A + G + A R NG+P V + PG + +R A+ Sbjct: 249 IVLKAKADGSRVLLGDVARVELG-AQSYAFANRENGKPAGVAAVQLSPGANAVRTAAAIQ 307 Query: 308 ARTEELRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSL-GIRTGMV 366 AR EELR LP G+ + + V+ S+ ++ + EA+ +V +V + L +R ++ Sbjct: 308 ARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQNVRYTVI 367 Query: 367 VVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMA-VKLEQGWNR 425 I PI L T M L ++ +++ +VLA+G++VDDAI+ VE + + +G Sbjct: 368 PAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIMAHEGLGP 427 Query: 426 RRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSWLAAVV 485 R A A ++ TLV A F+P+ALA G R A+++L S A+ Sbjct: 428 REATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILFSAFLALS 487 Query: 486 LIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRSVAWCVAFRG 545 L P L +L+ P AGH HD + R A + G Sbjct: 488 LTPALCATLLRPVP-------------AGH----HDKRGFFGAFNRAFNRLTARYESALG 530 Query: 546 RVVI--ATTVLFIGSLAAFALV-----PQQFFPSSDRPELLIDLHLPERASFEATQREAV 598 R++ +L +L+ +V P F P D+ + LP A+ E T R Sbjct: 531 RLIARGLRMMLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVD 590 Query: 599 RMEALLKDRPQIDHYVSFVGVGAPRFYLPLDQQLASPNFAQFVVTAKSVEDREALAR--A 656 + E LK R I +S +G G + PN A K ++R+ Sbjct: 591 QFERYLKGREDIGANLSVLGFGFSG---------SGPNAAMAFTELKDWKERKGSTSAAE 641 Query: 657 LEEPLRRQFSGARTRLTRL------ENGPPVGFPVQFRISGEQIPKVRAIAEQVAAEMRK 710 SG + L E G GF ++ + Q AE + Sbjct: 642 AMAAQAAMESGVDGMVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAA 701 Query: 711 ESRATNIQFDWDEPAQRSVSFEIDQKRAAQLGLSSQQISNFLAMQLSGYTITQYRERDKL 770 +SR + + PA SV EID+ +AA LG+S IS+ L+ + + + + ++ Sbjct: 702 KSRKLSGVYSDGLPAGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRM 761 Query: 771 ISVDLRAPRSERVDPARLATLSMPT-ANGPVPLATLGQFNNTLEYGVIWERNRQPTITVL 829 V L+A S R+ + L + + G VPLA L + + + P + + Sbjct: 762 QQVILQAQASARMQLEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRIS 821 Query: 830 ADVRPGVQGIDVTNDVNQKLNALRAELPVGYRIDVGGPVEENAKAQSSISAQMPLMVIAV 889 PGV + + ++ L +LP G+ + G + + + M L ++ V Sbjct: 822 GSAAPGV----ASGEAMAEMERLAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVV 877 Query: 890 LLLLMVQLQSFGRTMMVVMTAPLGLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVI 949 L+L +S+ + V++ PLGL+G V A++L P +G I ++G+ +N+++ Sbjct: 878 FLVLAALYESWSIPLSVMLVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAIL 937 Query: 950 LVDQIEQDIAAGRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFG-----PMAT 1004 +V+ Q + G G +A + A+V R RPI +T+ A L ++PL+ ++ + T Sbjct: 938 IVEFARQLRSEGMGLVEAAIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGT 997 Query: 1005 ALMGGITIATILTLFYLPALYALC 1028 + GG+ AT+L + ++P + L Sbjct: 998 GVFGGMVSATVLAVLFVPVFFVLV 1021 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 246/1086 (22%), Positives = 465/1086 (42%), Gaps = 86/1086 (7%) Query: 7 FNLSAWTLQHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQ 66 N+S +Q T + + L GI ++ L S P + + I PGA+ + Sbjct: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 Query: 67 EQITDRIARKLQETPDVDFLRSYSRAGQSQL---FFTIKDTAPASQVPQTWYQVRKKVGD 123 + + R + V + S S +++ F +D A++ Q + + Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNL-- 118 Query: 124 MAATLPQGVKG--PYFNDEFGDVYTNIYALAGDGFSPAQLRDYADQLRGELL-HVPGVAK 180 LP G+ Y D I A+ D + Q+ D AD + + L V GV + Sbjct: 119 ----LPTGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQ 174 Query: 181 IDYFGERNEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGNDRVYVRPTGQ 240 + G + I++ + + GI + A+ NA P GL+ + + Q Sbjct: 175 VSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQ 234 Query: 241 FDNLRALEEKIIQINNRS-FRLGDIATITRGYDEPQEQAMRTNGQPVLGIGVTMQPGGDV 299 I+ N + R+ D+A + R A +NG+P + I + QPG ++ Sbjct: 235 AKTAAEYAPLIVSYRNGTPVRVQDVAEV-RDSVADVRNAGSSNGKPSVLIIINRQPGANI 293 Query: 300 IRLGKALDARTEELRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSL 359 I + +L+ +P+ + + V + S+ + + +VA+V++V + L Sbjct: 294 IDTVDNVRELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFL 353 Query: 360 -GIRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVK 418 R ++ +++P+ L T MYL L +SL L +A G +VDDAI+ +E ++ Sbjct: 354 RNARATLIPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRH 413 Query: 419 LEQGWNRRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLL 478 +E G +AA F +L+ ++ +A F+PI + + G R ++A+L+ Sbjct: 414 IESGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILV 473 Query: 479 SWLAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDE-EDHDHPIYQTRIYTWLRRSV 537 S + ++ P++ +L+ P A DE H + D I++ + + +R++ Sbjct: 474 SLVVSLTTTPMMCAQLLRHDPAA--DEARRQRRHPWLQKIADQSAAIFEDMLLAY-QRTL 530 Query: 538 AWCV---AFRGRVVIATTVLFIGSLAAFALVPQQFFPSSDRPELLIDLHLPERASFEATQ 594 AW + +++AT L ++ + +P+ FFP D L+ + + SF+A + Sbjct: 531 AWALRAAPLMMLILLATIAL---NVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMR 587 Query: 595 REAVRMEALLKDRPQIDHYVSFVGVGAPR----FYLPLDQQLASPNFAQFVVTAKSVED- 649 + +++ P + V+F G G R Y+ L + A VV ++ Sbjct: 588 TKLNEFIDIVRADPAVSDVVAFTG-GQRRNGGFMYVTLKPLSERKDSADKVVARLRIKTA 646 Query: 650 REALARALEEPLRRQFSGARTRLTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAEMR 709 + A AR P++ GAR ++ E + + + + +R ++ + Sbjct: 647 KVAGARVFLVPVQDIRIGARQSDSQYE----------YSLKSDDVGLLRIWEPKIRLALS 696 Query: 710 KESRATNIQFDWDEPAQRSVSFEIDQKRAAQLGLSSQQISNFLAMQLSGYTI-TQYRERD 768 +I D + ++ + ID++ A + G++ Q I + L+ I T Y + Sbjct: 697 NLKELEDISTDQQDNGLQT-TLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMN 755 Query: 769 KLISVDLRAP---------RSERVDPARLATLSMPTANGPVP--LATLGQFN-NT-LEYG 815 + V AP R V A + LS T++ P L+ G+ N NT L Sbjct: 756 QYHVVMEAAPQYWQSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQT 815 Query: 816 VIWERNRQPTITVLADVRPGVQGIDVTND-----------------VNQKLNAL-RAELP 857 + +RQ + + P + V+++ ++Q A+ RA Sbjct: 816 ISTAPSRQIPLAAFSRFEPTTTSLSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQ 875 Query: 858 VGYRIDVGGPVEENAKA-QSSISAQMPLMVIAVLLLLMVQL----QSFGRTMMVVMTAPL 912 +G +V G A A QSS S+Q PL+++ LL + + L +S + ++ T P Sbjct: 876 LGVPTNVLGTFAGTANAFQSSTSSQ-PLLILTALLAVYIVLGILYESLIHPITIISTLPS 934 Query: 913 GLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVD-QIEQDIAAGRGRFDAIVGA 971 +G + AL++ G F +A++G I ++GI+ +N++++VD I+ + G DAI A Sbjct: 935 AGVGALLALMVTGTDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEA 994 Query: 972 TVRRFRPITLTAAAAVLALIPLLRSNFFG-----PMATALMGGITIATILTLFYLPALYA 1026 RFRPI +T AA+L IPL + G P+ +++GG+ ++ +LTL+ P +Y Sbjct: 995 CKLRFRPIMMTTMAALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYL 1054 Query: 1027 LCYRVK 1032 R+ Sbjct: 1055 YMERLS 1060 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 246/1070 (22%), Positives = 458/1070 (42%), Gaps = 113/1070 (10%) Query: 19 LVTFILALVTLLG-IGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKL 77 + +++A++ +LG + S LS + P + I+ + GA+A+ +++ +T I +++ Sbjct: 10 IFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDSVTQVIEQQM 69 Query: 78 QETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQT-WYQVRKKVGDMAATLPQGVK--G 134 + +D L+ S + S T+ T A P QV+ K+ + A LPQ V+ G Sbjct: 70 K---GLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQAVQNNG 126 Query: 135 PYFNDEFGDVYTNIYALAGDG--FSPAQLRDY-ADQLRGELLHVPGVAKIDYFGERNEHI 191 D+ + +L D + + D+ + L ++ V GV + FG N + Sbjct: 127 VTVTKASTDILM-VLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT-NYAM 184 Query: 192 YIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLI------------TTGNDRVYVRPTG 239 I I A++ + + P + A+ QN V G I T R + Sbjct: 185 RIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKLTTPD 244 Query: 240 QFDNLRALEEKIIQINNRSFRLGDIATITRGYDEPQEQAMRTNGQPVLGIGVTMQPGGDV 299 +F N+ ++ +L D+A + G E + A + NG+P + + + G + Sbjct: 245 EFRNIIVKSS----VDGSVVKLSDVARVELG-GESYQVASQQNGKPSSALAIQLATGANA 299 Query: 300 IRLGKALDARTEELRKRLPAGLTLT---AVSSMPHAVEKSVDDFLEAVAEAVA-IVLVVS 355 + A+ + EL PA + L A + P V S+++ ++ + EA+ +VL++ Sbjct: 300 LATADAVKKKLAELEPYFPASMKLKTNIAYDTTPF-VRVSLEEVVKTLIEAIVLVVLIMY 358 Query: 356 LVSLGIRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMM 415 L IR + I++P+VL T + +F ++ +++ +VLA+GLLVDDAI+ VE Sbjct: 359 LFLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVE-- 416 Query: 416 AVKLEQGWNRRRAAAFAYTSTAFPMLTGTLVTVAG-----FLPIALAKSGTGEYTR--SI 468 +E+ + + + T + +TG LV +A F+P+A TG R SI Sbjct: 417 --NVERLMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSI 474 Query: 469 FEVSAIALLLSWLAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTR 528 VSA+A LS + A+ L P L +LK PHAG + Q R Sbjct: 475 TIVSAMA--LSVMVALTLTPALCATLLK--------------PHAGGH-------VQQGR 511 Query: 529 IYTWLRRS-----------VAWCVAFRGRVVIATTVLFIGSLAAFALVPQQFFPSSDRPE 577 +TW RS VA + R ++ ++ + F +P F P D+ Sbjct: 512 FFTWFNRSFDRSATRYQGGVAGLLKRGKRGLLMYALIAVAMAVLFMRLPTSFLPEEDQGV 571 Query: 578 LLIDLHLPERASFEATQREAVRMEALLKDRPQ-IDHYVSFVGVGAPRFYLPLDQQLASPN 636 L+ + LP A+ E T ++ ++P+ ++ ++ VG G S N Sbjct: 572 LMAQIQLPTGATAEQTATVVKTVQEYFMNKPESVESVLAIVGAGVGG---------NSQN 622 Query: 637 FAQFVVTAKSVEDREALARALEEPLRR---QFSGARTRLTRLENGPPV-------GFPVQ 686 A+ + K E R ++ E +RR S R L N P V GF ++ Sbjct: 623 GARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGARVFLMNPPAVRGLGQSSGFDLE 682 Query: 687 FR-ISGEQIPKVRAIAEQVAAEMRKESRATNIQFD-WDEPAQRSVSFEIDQKRAAQLGLS 744 + + G + +Q R + N++ D+ Q V+ ID ++A L ++ Sbjct: 683 LKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLDDTPQLRVA--IDDRKADALSIA 740 Query: 745 SQQISNFLAMQLSGYTITQYRERDKLISVDLRAPRSERVDPARLATLSMPTANGP-VPLA 803 + I+ LA + G + + ++ V ++ + R+ L + A VP A Sbjct: 741 TSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQADDLNRWYVRNAASQMVPFA 800 Query: 804 TLGQFNNTLEYGVIWERNRQPTITVLADVRPGVQGIDVTNDVNQKLNALRAELPVGYRID 863 T ++ N + ++ + GV +V + L A+LP G + Sbjct: 801 AFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMAEVEK----LVAQLPAGIGFE 856 Query: 864 VGGPVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSFGRTMMVVMTAPLGLIGVVGALLL 923 G + + + + ++ V L L +S+ V++ PLG+IG V + Sbjct: 857 WTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVILAVPLGIIGTVLLTGI 916 Query: 924 FGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAAGRGRFDAIVGATVRRFRPITLTA 983 FG +G + +G+ +N++++V+ +Q +G+ ++A + A R RPI +T+ Sbjct: 917 FGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEATLEAVQLRLRPILMTS 976 Query: 984 AAAVLALIPLLRSNFFGP-----MATALMGGITIATILTLFYLPALYALC 1028 A + ++PL ++ G + T ++GG+ AT+L +F++P Y L Sbjct: 977 LAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVPLFYYLI 1026 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,918,004 Number of extensions: 117602 Number of successful extensions: 502 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 433 Number of HSP's successfully gapped: 12 Length of query: 1047 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 952 Effective length of database: 1,170,045 Effective search space: 1113882840 Effective search space used: 1113882840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)