BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0220.p
         (658 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309615|ref|YP_003773707.1| beta-galactosidase [Herbaspiril...  1346   0.0  

>gi|300309615|ref|YP_003773707.1| beta-galactosidase [Herbaspirillum
           seropedicae SmR1]
          Length = 658

 Score = 1346 bits (3484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 655/658 (99%), Positives = 655/658 (99%)

Query: 1   MSLRLGVCYYPEHWPEAMWDSDAQRMKALGIKQVRIGEFAWSRIEPSPGELRWDWLDRAI 60
           MSLRLGVCYYPEHWPEAMWDSDAQRMKALGIKQVRIGEFAWSRIEPSPGELRWDWLDRAI
Sbjct: 1   MSLRLGVCYYPEHWPEAMWDSDAQRMKALGIKQVRIGEFAWSRIEPSPGELRWDWLDRAI 60

Query: 61  EVLARHGLEVVMCTPTATPPKWLIDRHDDVLAVDANGRQRAFGSRRHYDFSSDSYFEESQ 120
           EVLARHGLEVVMCTPTATPPKWLIDRHDDVLAVDANGRQRAFGSRRHYDFSSDSYFEESQ
Sbjct: 61  EVLARHGLEVVMCTPTATPPKWLIDRHDDVLAVDANGRQRAFGSRRHYDFSSDSYFEESQ 120

Query: 121 RIVRLLGERYGQHPAVTAWQTDNEYGCHQTVVSYSASAQRRFRQWLRQRYGSIDALNTAW 180
           RIVRLLGERYGQHPAVTAWQTDNEYGCHQTVVSYSASAQRRFRQWLRQRYGSIDALNTAW
Sbjct: 121 RIVRLLGERYGQHPAVTAWQTDNEYGCHQTVVSYSASAQRRFRQWLRQRYGSIDALNTAW 180

Query: 181 GTVFWSMEYRSFDEIDAPIGTVTEAHPSHRLDYRRFASDEVARYNRMQVEILRALSPGRL 240
           GTVFWSMEYRSFDEIDAPIGTVTEAHPSHRLDYRRFASDEVARYNRMQVEILRALSPGRL
Sbjct: 181 GTVFWSMEYRSFDEIDAPIGTVTEAHPSHRLDYRRFASDEVARYNRMQVEILRALSPGRL 240

Query: 241 MVHNFMQMFLEFDHYPVAADLDVATWDSYPLGALEVMWFDDATKARWLRTGHPDFASFNH 300
           MVHNFMQMFLEFDHYPVAADLDVATWDSYPLGALEVMWFDDATKARWLRTGHPDFASFNH
Sbjct: 241 MVHNFMQMFLEFDHYPVAADLDVATWDSYPLGALEVMWFDDATKARWLRTGHPDFASFNH 300

Query: 301 DLYRGMSAQPFWVMEQQPGPVNWAHWNPHPLPGMVRLWSWEAFAHGAGCVSYFRWRQCPF 360
           DLYRGMSAQPFWVMEQQPGPVNWAHWNPHPLPGMVRLWSWEAFAHGAGCVSYFRWRQCPF
Sbjct: 301 DLYRGMSAQPFWVMEQQPGPVNWAHWNPHPLPGMVRLWSWEAFAHGAGCVSYFRWRQCPF 360

Query: 361 AQEQLHAGLNRPDNRLDVGGSEAEQVAREIITVEQAQGALAQPRGKVALLFDYDAKWLFD 420
           AQEQLHAGLNRPDNRLDVGGSEAEQVAREIITVEQAQGALAQPRGKVALLFDYDAKWLFD
Sbjct: 361 AQEQLHAGLNRPDNRLDVGGSEAEQVAREIITVEQAQGALAQPRGKVALLFDYDAKWLFD 420

Query: 421 IHFQGIDFEYQRFAFQYYTTLRALGLDVDILPLHAKLDGYAMIVVPPLPIVPDDLPGRIA 480
           IHFQGIDFEYQRFAFQYY TLRALGLDVDILPLHAKLDGYAMIVVPPLPIVPDDLPGRIA
Sbjct: 421 IHFQGIDFEYQRFAFQYYATLRALGLDVDILPLHAKLDGYAMIVVPPLPIVPDDLPGRIA 480

Query: 481 ESGALSVFGPRSGSKTRSLQIPATLPPGPLQQLLPMRVWRVESLRPNVTEPVQFGAHSGQ 540
           ESGALSVFGPRSGSKTRSLQIPATLPPGPLQQLLPMRVWRVESLRPNVTEPVQFGAHSGQ
Sbjct: 481 ESGALSVFGPRSGSKTRSLQIPATLPPGPLQQLLPMRVWRVESLRPNVTEPVQFGAHSGQ 540

Query: 541 GAHWRDLIEADGEGLQTLAQFGDGHPAIVRKERAHYLAGIFDDALTSACFEQLARDAGLA 600
           GAHWRDLIEADGEGLQTLAQFGDGHPAIVRKERAHYLAGIFDDALTSACFEQLARDAGLA
Sbjct: 541 GAHWRDLIEADGEGLQTLAQFGDGHPAIVRKERAHYLAGIFDDALTSACFEQLARDAGLA 600

Query: 601 PQRLPEGLRLQERGGLCFAFNYSDAAITLPQAQGAQFLVGQAQLEPQGVAVYRTSQRP 658
           PQRLPEGLRLQERGGLCFAFNYSDAAITLPQAQGAQFLVGQAQLEPQGVAVYRT Q P
Sbjct: 601 PQRLPEGLRLQERGGLCFAFNYSDAAITLPQAQGAQFLVGQAQLEPQGVAVYRTGQHP 658


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,275,335
Number of extensions: 101855
Number of successful extensions: 268
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 567
Effective length of database: 1,188,985
Effective search space: 674154495
Effective search space used: 674154495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)