BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0219.p (381 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 767 0.0 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 375 e-105 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 361 e-101 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 331 5e-92 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 308 5e-85 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/381 (99%), Positives = 380/381 (99%) Query: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD Sbjct: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 Query: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR Sbjct: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 Query: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL Sbjct: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 Query: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA Sbjct: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 Query: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIA 300 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEI Sbjct: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIG 300 Query: 301 SQGQYGIHREVVLVERLGEQTYVHLDEPAGQPLVAKAAGDARITRGERVRVAIAPACAYL 360 SQGQYGIHREVVLVERLGEQTYVHLDEPAGQPLVAKAAGDARITRGERVRVAIAPACAYL Sbjct: 301 SQGQYGIHREVVLVERLGEQTYVHLDEPAGQPLVAKAAGDARITRGERVRVAIAPACAYL 360 Query: 361 FDQDGLALTRTQVQGGLAVAA 381 FDQDGLALTRTQVQGGLAVAA Sbjct: 361 FDQDGLALTRTQVQGGLAVAA 381 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 375 bits (962), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/371 (52%), Positives = 259/371 (69%), Gaps = 11/371 (2%) Query: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 MA++++R K Y D V+R+++L+I + EF VF+GPSGCGKSTLLR IAGLE+++ GD Sbjct: 1 MAAVSIRNLAKRYDDNE-VMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGD 59 Query: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 L IG +R+N+VP+++R VAMVFQSYAL+PHM++Y+NM+FGL +A KAEI+ V+ AA+ Sbjct: 60 LDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAK 119 Query: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 IL ++ LL RKP+ LSGGQRQRVAIGRAI R+P VFLFDEPLSNLDA LR + R+E A+L Sbjct: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKL 179 Query: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 H + +++YVTHDQ+EAMTLAD+IV+L G I QVG+P +LYHHP NRFVA Sbjct: 180 HDDL-KTTMIYVTHDQIEAMTLADKIVVLSE-------GRIEQVGSPQQLYHHPANRFVA 231 Query: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIA 300 GFIGSP+MNF+ VA +Q +G+ V+L G LQ GQ VT+GVRPEH+ IA Sbjct: 232 GFIGSPKMNFIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIA 291 Query: 301 SQGQYGIHREVVLVERLGEQTYVHLD-EPAGQPLVAKAAGDARITRGERVRVAIAPACAY 359 QGQ + +E LG+ +Y++ E + L+ + G + +A PA + Sbjct: 292 -QGQAALQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCH 350 Query: 360 LFDQDGLALTR 370 LF DG AL R Sbjct: 351 LFGADGQALPR 361 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 361 bits (926), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/370 (49%), Positives = 251/370 (67%), Gaps = 8/370 (2%) Query: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 MA + ++ +K Y V+ ++LDI + EFCV +GPSGCGKSTLLR + GLE+++ G+ Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 L IGG+ VN +P A+R +AMVFQSYAL+PHM VY+NM+FGL +A K++I+ ++R AA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 IL+++ LLQR P+ELSGGQRQRVAIGRAIVR+P +FLFDEPLSNLDA LR QTR+EIA+L Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 HRQ A++VYVTHDQVEAMTL D+IV++H G I Q GTP+ELY P+N FVA Sbjct: 181 HRQLA-ATIVYVTHDQVEAMTLGDKIVVMHE-------GRIQQAGTPLELYQQPQNLFVA 232 Query: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIA 300 GFIGSP+MNF V ++G+ V ++G L + PG VT+G+R E + Sbjct: 233 GFIGSPKMNFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREG 292 Query: 301 SQGQYGIHREVVLVERLGEQTYVHLDEPAGQPLVAKAAGDARITRGERVRVAIAPACAYL 360 +H V LVE LGE ++++ G +V + G+ + G+ + +++ +L Sbjct: 293 LGDGQPLHGVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHL 352 Query: 361 FDQDGLALTR 370 FD G AL R Sbjct: 353 FDAQGQALRR 362 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 331 bits (849), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 176/326 (53%), Positives = 231/326 (70%), Gaps = 16/326 (4%) Query: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 MAS+ +RA +K +G + +IR VD+DI + EF V +GPSGCGKSTLLR +AGLE++T G+ Sbjct: 1 MASVQIRAVKKQFG-STQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGE 59 Query: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 + IGG VN+V R +AMVFQ+YAL+PHMTV +NM+F LTLAK KA ++++V++AA Sbjct: 60 ILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAAD 119 Query: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 IL L +LL R P++LSGGQRQRVA+GRAIVR P VFLFDEPLSNLDA LR Q R EI L Sbjct: 120 ILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKEL 179 Query: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 H++ + S +YVTHDQ+EAMT+AD+IV++ R G + Q G P++LY +P N FVA Sbjct: 180 HQRLKTTS-IYVTHDQIEAMTMADQIVVM-------RDGLVEQRGRPLDLYDYPANLFVA 231 Query: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGAL---QPGQMVTVGVRPEHM 297 GFIGSP MNF+PA ++ N + ++ T + A GA GQ VT GVRPEH+ Sbjct: 232 GFIGSPAMNFIPAT---LRRNATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHL 288 Query: 298 EIASQGQYGIHREVVLVERLGEQTYV 323 I + GQ GI +V++VE G T V Sbjct: 289 SIGAAGQ-GIATKVIVVEPTGADTEV 313 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 308 bits (789), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 175/370 (47%), Positives = 236/370 (63%), Gaps = 22/370 (5%) Query: 1 MASITLRAAQKAYG---DAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLT 57 MA+I L+ +K YG A VI +D +I + EF V +GPSGCGKSTLLR +AGLE+++ Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 58 SGDLFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVRE 117 SG + IG + VND+ +R +AMVFQ+YAL+PHMTVY+NM++GL + L K+EI+ +V+ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 118 AARILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEI 177 AA IL+L LL+R P++LSGGQRQRVA+GRAIVR+P VFLFDEPLSNLDA LR Q R+EI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 178 ARLHRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNR 237 +LH S +YVTHDQVEAMTL R+++++ G Q+GTP E+Y P Sbjct: 181 QKLHASLRTTS-LYVTHDQVEAMTLGQRMIVMNRGVAE-------QIGTPAEVYARPATT 232 Query: 238 FVAGFIGSPRMNFLPAQVAGVQENGILVRLS-GSEETLLVAAQ---GALQPGQMVTVGVR 293 FVA FIGSP MN L +++ +G +S G+ +L Q GA GQ +GVR Sbjct: 233 FVASFIGSPPMNLLQGKLSA---DGASFEVSKGNASDILRLPQPLTGA--AGQERILGVR 287 Query: 294 PEH-MEIASQGQYGIHREVVLVERLGEQTYVHLDEPAGQPLVAKAAGDARITRGERVRVA 352 PEH + I + EV LVE LG + VH GQ LV + + ++ G+R+ + Sbjct: 288 PEHLLPILDGSAAQLSLEVELVEALGAELLVH-ARCGGQALVLRCPANVQVRTGQRIGAS 346 Query: 353 IAPACAYLFD 362 + FD Sbjct: 347 FGAGDVHWFD 356 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,188,069 Number of extensions: 51690 Number of successful extensions: 625 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 369 Number of HSP's successfully gapped: 140 Length of query: 381 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 294 Effective length of database: 1,207,925 Effective search space: 355129950 Effective search space used: 355129950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)