BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0207.p
         (807 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309633|ref|YP_003773725.1| TonB-dependent receptor protein...  1640   0.0  

>gi|300309633|ref|YP_003773725.1| TonB-dependent receptor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 807

 Score = 1640 bits (4248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 802/807 (99%), Positives = 804/807 (99%)

Query: 1   MQCKLTRLSLLISGLFMAGAPALAQTTTNVGTVTVQGGGSASAGTAAATGLIQAEDSPKA 60
           MQCKLTRLSLLISGLF+AGAPALAQTTTNVGTVTVQGGGSASAGTAAATGLIQAEDSPKA
Sbjct: 1   MQCKLTRLSLLISGLFIAGAPALAQTTTNVGTVTVQGGGSASAGTAAATGLIQAEDSPKA 60

Query: 61  RSSVNREYMEKQSPTSNPYQMINLLPGVNTYDNDGSGLFGGNIRVRGFNSDQLGFTINGA 120
           RSSVNREYMEKQSPTSNPYQMINLLPGVNTYDNDGSGLFGGNIRVRGFNSDQLGFTINGA
Sbjct: 61  RSSVNREYMEKQSPTSNPYQMINLLPGVNTYDNDGSGLFGGNIRVRGFNSDQLGFTINGA 120

Query: 121 PVNDSGSFAVYPQQYTDPENLCDVFVTQGSTDTEAPHVGASGGNIGMAFCAPEDQQRIRV 180
           PVNDSGSFAVYPQQYTDPENLCDVFVTQGSTDTEAPHVGASGGNIGMAFCAPEDQQRIRV
Sbjct: 121 PVNDSGSFAVYPQQYTDPENLCDVFVTQGSTDTEAPHVGASGGNIGMAFCAPEDQQRIRV 180

Query: 181 TNAFGSNSLWKRYVRFDSGKLLDNRFKFFISYSKTTADKFKGPGGAIKDHVDIGTNFDLG 240
           TNAFGSNSLWKRYVRFDSGKLLDNRFKFFISYSKTTADKFKGPGGAIKDHVDIGTNFDLG
Sbjct: 181 TNAFGSNSLWKRYVRFDSGKLLDNRFKFFISYSKTTADKFKGPGGAIKDHVDIGTNFDLG 240

Query: 241 QGSFINANLLYNRQLNNNYRSLTKTQIAQLGRNADFGSIAPQHQPAVGGTAQNDTTYAPN 300
           QGSFINANLLYNRQLNNNYRSLTKTQIAQLGRNADFGSIAPQHQPAVGGTAQNDTTYAPN
Sbjct: 241 QGSFINANLLYNRQLNNNYRSLTKTQIAQLGRNADFGSIAPQHQPAVGGTAQNDTTYAPN 300

Query: 301 VAANIAANGYYAYNLNPFENWLGTINAHFQLSPTASLDIDPYFWYGFGTGGNQLQTVREG 360
           VAANIAANGYYAYNLNPFENWLGTINAHFQLSPTASLDIDPYFWYGFGTG NQLQTVREG
Sbjct: 301 VAANIAANGYYAYNLNPFENWLGTINAHFQLSPTASLDIDPYFWYGFGTGANQLQTVREG 360

Query: 361 GVGGASQVGGGAADINGDGDRLDTVYAYQGSRTRTYRPGVTFKFNQQLDNHRLLAGYWVE 420
           GV GASQVGGGAADINGDGDRLDTVYAYQGSRTRTYRPGVTFKFNQQ+DNHRLLAGYWVE
Sbjct: 361 GVAGASQVGGGAADINGDGDRLDTVYAYQGSRTRTYRPGVTFKFNQQMDNHRLLAGYWVE 420

Query: 421 RARHQQTGPFSRVDNNGNIANLWQDNFDLWLRNADGSILQYRDTLTVSTAQSIFLQDSIS 480
           RARHQQTGPFSRVDNNGNIANLWQDN DLWLRNADGSILQYRDTLTVSTAQSIFLQDSIS
Sbjct: 421 RARHQQTGPFSRVDNNGNIANLWQDNSDLWLRNADGSILQYRDTLTVSTAQSIFLQDSIS 480

Query: 481 MMNDKLNVQVGGRYSSIDRDFTNYPSSGAANNASAGFYKVKKNYADFLPSLGVRFQLDDA 540
           MMNDKLNVQVGGRYSSIDRDFTNYPSSGAANNASAGFYKVKKNYADFLPSLGVRFQLDDA
Sbjct: 481 MMNDKLNVQVGGRYSSIDRDFTNYPSSGAANNASAGFYKVKKNYADFLPSLGVRFQLDDA 540

Query: 541 QSVFFNAAKNFKAPGNFSYFGLLSGGTIVNGQLVGATQREVPVDKETSWNYDLGYRYNTE 600
           QSVFFNAAKNFKAPGNFSYFGLLSGGTIVNGQLVGATQREVPVDKETSWNYDLGYRYNTE
Sbjct: 541 QSVFFNAAKNFKAPGNFSYFGLLSGGTIVNGQLVGATQREVPVDKETSWNYDLGYRYNTE 600

Query: 601 KWMASASLFYIDYHNRIASAYNPDTGNKTDYNVGDATSHGMELESGYAFTRNLSMYGSLS 660
           KWMASASLFYIDYHNRIASAYNPDTGNKTDYNVGDATSHGMELESGYAFTRNLSMYGSLS
Sbjct: 601 KWMASASLFYIDYHNRIASAYNPDTGNKTDYNVGDATSHGMELESGYAFTRNLSMYGSLS 660

Query: 661 YIKSKMKQDLRNSSTQFLPTSGKEFPDTPNWLSGLSLQYQQDGWYVFGQAKYTGRRYTTL 720
           YIKSKMKQDLRNSSTQFLPTSGKEFPDTPNWLSGLSLQYQQDGWYVFGQAKYTGRRYTTL
Sbjct: 661 YIKSKMKQDLRNSSTQFLPTSGKEFPDTPNWLSGLSLQYQQDGWYVFGQAKYTGRRYTTL 720

Query: 721 VNDDALGGYTLFNAGAGMTFASTTWLKKPTVRLNVYNLFDKQYLNLNGGSGSQFTTNAVA 780
           VNDDALGGYTLFNAGAGMTFASTTWLKKPTVRLNVYNLFDKQYLNLNGGSGSQFTTNAVA
Sbjct: 721 VNDDALGGYTLFNAGAGMTFASTTWLKKPTVRLNVYNLFDKQYLNLNGGSGSQFTTNAVA 780

Query: 781 VNGIPGTDPSLYIGAPRTFTVTLTADF 807
           VNGIPGTDPSLYIGAPRTFTVTLTADF
Sbjct: 781 VNGIPGTDPSLYIGAPRTFTVTLTADF 807


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,377,928
Number of extensions: 94732
Number of successful extensions: 284
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 3
Length of query: 807
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 714
Effective length of database: 1,179,515
Effective search space: 842173710
Effective search space used: 842173710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)