BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0204.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309636|ref|YP_003773728.1| hypothetical protein Hsero_0294...   379   e-106

>gi|300309636|ref|YP_003773728.1| hypothetical protein Hsero_0294
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  379 bits (972), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/192 (98%), Positives = 191/192 (99%)

Query: 1   MQASSDFRSALRTHLAAVAGTALCYFLFYSINEWLFRRTQFTEGIAWIYLPAGVRLICTL 60
           MQASS+FRSALRTHLAA AGTALCYFLFYSINEWLFRRTQFTEGIAWIYLPAGVRLICTL
Sbjct: 1   MQASSEFRSALRTHLAAAAGTALCYFLFYSINEWLFRRTQFTEGIAWIYLPAGVRLICTL 60

Query: 61  LFAEAGCVGLLIGSLATAATYHLFPHDPIAVAGYCLISAGAPYLAYRLTLSGLDLGRNLS 120
           LFAEAGCVGLLIGSLATAATYHLFPHDPIAVAGYCLISAGAPYLAYRLTLSGLDLGRNLS
Sbjct: 61  LFAEAGCVGLLIGSLATAATYHLFPHDPIAVAGYCLISAGAPYLAYRLTLSGLDLGRNLS 120

Query: 121 NLNTTRLMACILLYALSNPLLQLIWFVMRGVYPDFWSGLIVMSIGDLSGSLIVVYLCKLL 180
           NLNTTRLMACILLYALSNPLLQLIWFVMRGVYPDFWSGLIVMSIGDLSGSLIVVYLCKLL
Sbjct: 121 NLNTTRLMACILLYALSNPLLQLIWFVMRGVYPDFWSGLIVMSIGDLSGSLIVVYLCKLL 180

Query: 181 LSLLPRLPLPRP 192
           LSLLPRLPLPRP
Sbjct: 181 LSLLPRLPLPRP 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.144    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 560,488
Number of extensions: 22263
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)