BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0202.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309638|ref|YP_003773730.1| CDP-diacylglycerol pyrophosphat...   499   e-142

>gi|300309638|ref|YP_003773730.1| CDP-diacylglycerol pyrophosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  499 bits (1284), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/250 (98%), Positives = 246/250 (98%)

Query: 1   LRFHSCLATVLPLLALWLGSPPRPAMAADPHKLWEITSQQCVPHMQASGQPQPCAMVDLA 60
           LRF SCLATVLPLLALWL   PRPAMAADPHKLWEITSQQCVPHMQASGQPQPCAMVDLA
Sbjct: 5   LRFPSCLATVLPLLALWLVGAPRPAMAADPHKLWEITSQQCVPHMQASGQPQPCAMVDLA 64

Query: 61  RGFVILKDLVGPAQYLLMPTRRLTGIESPELLEPQAPNYWAYAWQQRARVAQTLGRALSD 120
           RGFVILKDLVGPAQYLLMPTRRLTGIESPELLEPQAPNYWAYAWQQRARVAQTLGRALSD
Sbjct: 65  RGFVILKDLVGPAQYLLMPTRRLTGIESPELLEPQAPNYWAYAWQQRARVAQTLGRALSD 124

Query: 121 EQLGVEVNSAAGRSQLHLHLHIDCMRRDVAASLAAHRDDPLQQWRPWHFEGHRYWVMRLP 180
           EQLGVEVNSAAGRSQLHLHLHIDCMRRDVAASLAAHRDDPLQQWRPWHFEGHRYWVMRLP
Sbjct: 125 EQLGVEVNSAAGRSQLHLHLHIDCMRRDVAASLAAHRDDPLQQWRPWHFEGHRYWVMRLP 184

Query: 181 AEALAQHDPFKLAAARSAYAAANMASQSLLLTGARFADGGSGFFLVNMPVNFDLQEQGSA 240
           AEALAQHDPFKLAAARSAYAAANMASQSLLLTGARFADGGSGFFLVNMPVNFDLQEQGSA
Sbjct: 185 AEALAQHDPFKLAAARSAYAAANMASQSLLLTGARFADGGSGFFLVNMPVNFDLQEQGSA 244

Query: 241 EVLMDHDCRW 250
           EVLMDHDCRW
Sbjct: 245 EVLMDHDCRW 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 774,773
Number of extensions: 30809
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)