BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0197.p
         (605 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309643|ref|YP_003773735.1| adenylate cyclase [Herbaspirill...  1149   0.0  

>gi|300309643|ref|YP_003773735.1| adenylate cyclase [Herbaspirillum
           seropedicae SmR1]
          Length = 757

 Score = 1149 bits (2973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/575 (99%), Positives = 573/575 (99%)

Query: 12  MLRRLRTAFATYWARWLLALVLTGLATAQVMALLPNRLVERMDLFFYDLRMRVAQPDLDP 71
           MLRRLRTAFATYWARWLLALVLTGLATAQVMALLPNRLVERMDLFFYDLRMRVAQPDLDP
Sbjct: 1   MLRRLRTAFATYWARWLLALVLTGLATAQVMALLPNRLVERMDLFFYDLRMRVAQPDLDP 60

Query: 72  RIVIVDIDEKSIAELGRWPWSRDVIAQLVRQMTQTYQAQSVGFDVVFAEPDTSSGYGRLA 131
           RIVIVDIDEKSIAELGRWPWSRDVIAQLVRQMTQTYQAQSVGFDVVFAEPDTSSGYGRLA
Sbjct: 61  RIVIVDIDEKSIAELGRWPWSRDVIAQLVRQMTQTYQAQSVGFDVVFAEPDTSSGYGRLA 120

Query: 132 QLADGPLKDVPQFARQLQALKPQMDYDARLAEALRGQPVVMGYNLSNEAGAIAKGQLPPP 191
           QLADGPLKDVPQFARQLQALKPQMDYDARLAEALRGQPVVMGYNLSNEAGAIAKGQLPPP
Sbjct: 121 QLADGPLKDVPQFARQLQALKPQMDYDARLAEALRGQPVVMGYNLSNEAGAIAKGQLPPP 180

Query: 192 AFSVADLGGRALDVTHWRAYGANLPQLQAAARAGGFFNPVPDDDGLIRAVPLMAQVGEHF 251
           AFSVADLGGRALDVTHWRAYGANLPQLQAAARAGGFFNPVPDDDGLIRAVPLMAQVGEHF
Sbjct: 181 AFSVADLGGRALDVTHWRAYGANLPQLQAAARAGGFFNPVPDDDGLIRAVPLMAQVGEHF 240

Query: 252 YESLALATARVALDGRRIKPIFLQRQDVLFEGQLRDYGALAGIAVETRPQPLFIPVERHL 311
           YESLALATARVALDGRRIKPIFLQRQDVLFEGQLRDYGALAGIAVETRPQPLFIPVERHL
Sbjct: 241 YESLALATARVALDGRRIKPIFLQRQDVLFEGQLRDYGALAGIAVETRPQPLFIPVERHL 300

Query: 312 TTLVSYRGKGGPNGGAFRYVPAVDVIRGTYPHAQLDGRIMLVGTTVPGLNDLRATPVNPV 371
           TTLVSYRGKGGPNGGAFRYVPAVDVIRGTYPHAQLDGRIMLVGTTVPGLNDLRATPVNPV
Sbjct: 301 TTLVSYRGKGGPNGGAFRYVPAVDVIRGTYPHAQLDGRIMLVGTTVPGLNDLRATPVNPV 360

Query: 372 YPGVEIHANLIASIIDGDFKARPDFAVGYDLLQVLAVGVLLGLLLPMLGPLWSIVLTLAT 431
           YPGVEIHANLIASIIDGDFKARPDFAVGYDLLQVLAVGVLLGLLLPMLGPLWSIVLTLAT
Sbjct: 361 YPGVEIHANLIASIIDGDFKARPDFAVGYDLLQVLAVGVLLGLLLPMLGPLWSIVLTLAT 420

Query: 432 AAGLGGLNFWLYDSAGMVLPLATALLLVASLFICNLGWGYLFEYRNRKAIVNLFGEYVAP 491
           AAGLGGLNFWLYDSAGMVLPLATALLLVASLFICNLGWGYLFEYRNRKAIVNLFGEYVAP
Sbjct: 421 AAGLGGLNFWLYDSAGMVLPLATALLLVASLFICNLGWGYLFEYRNRKAIVNLFGEYVAP 480

Query: 492 ELVAEMAANPASYNMEGEIRELTVMFSDVRGFTTISESLQPNELREYINVYLTAMSEDIR 551
           ELVAEMAANPASYNMEGEIRELTVMFSDVRGFTTISESLQPNELREYINVYLTAMSEDIR
Sbjct: 481 ELVAEMAANPASYNMEGEIRELTVMFSDVRGFTTISESLQPNELREYINVYLTAMSEDIR 540

Query: 552 GNRGTLDKYIGDAVMAFWGAPLALPDHAARAXNSS 586
           GNRGTLDKYIGDAVMAFWGAPLALPDHAARA  ++
Sbjct: 541 GNRGTLDKYIGDAVMAFWGAPLALPDHAARAVATA 575


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,857,101
Number of extensions: 79881
Number of successful extensions: 253
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 514
Effective length of database: 1,188,985
Effective search space: 611138290
Effective search space used: 611138290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)