BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0195.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313696|ref|YP_003777788.1| galactokinase/mevalonate kinase...   476   e-136

>gi|300313696|ref|YP_003777788.1| galactokinase/mevalonate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 332

 Score =  476 bits (1226), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/331 (71%), Positives = 272/331 (82%)

Query: 1   MIITRTPFRISFFGGGTDYPGWFREHGGAVLATTINKYCYITCRHLPPFFEHKHRIVYSQ 60
           MIITRTPFR+SFFGGGTDYPGW+ EHGGAVLAT+I+KYCYITCRHLPPFFEHKHRIV+S 
Sbjct: 1   MIITRTPFRMSFFGGGTDYPGWYAEHGGAVLATSIDKYCYITCRHLPPFFEHKHRIVHSL 60

Query: 61  IENVRHNDEIQHPAVRAILNWAKVEKGVEIHHDGDLPARSGLGSSSAFTVGLLHALHGLN 120
           IENV+  +EI+HPAVR IL W   E+G+EIHHDGDLPARSGLGSSS+FTVG+LHAL  L 
Sbjct: 61  IENVQTVEEIKHPAVRGILGWTGCERGLEIHHDGDLPARSGLGSSSSFTVGMLHALAALE 120

Query: 121 QKMANKDQLAHEAIHLEQNIIGENVGSQDQVSAAYGGFNRIEFHHNDSFEVSPVILPPHR 180
            + A+K  LA  AIH+EQN++ ENVGSQDQVSAAYGGFN IEFH N SF VSPV+L   R
Sbjct: 121 GRYASKQYLASTAIHIEQNVLAENVGSQDQVSAAYGGFNMIEFHRNGSFSVSPVVLRQER 180

Query: 181 QDELRDHLMLCFTGFSRIASEVAKSKIDNLKSREKELKLMHAMVDEALAILQDPQASIDL 240
            +E   HLMLCFTGFSRIASEVAKS+IDNLK R+ +L  M  MVDEA++ILQ    SID 
Sbjct: 181 LNEFHSHLMLCFTGFSRIASEVAKSQIDNLKQRQAQLHRMREMVDEAMSILQSEHTSIDE 240

Query: 241 FGQLLDTSWQYKRSLSDRVSTPEIDSIYQAAMDAGAIGGKILGAGGGGFLLIFAKPERHA 300
            G+LL  SW  KRSLSD+VST EID +YQ AM AGAIGGKI+GAGGGGFL++F KPE+  
Sbjct: 241 LGKLLHESWLCKRSLSDKVSTSEIDYLYQEAMQAGAIGGKIMGAGGGGFLMLFVKPEQQP 300

Query: 301 AIRERLNKLVHVPFDFDDSGSRVVLYQPNGL 331
           A+RERL  L+HVPF FDD G+R+V+Y P GL
Sbjct: 301 AVRERLKHLIHVPFKFDDGGTRIVMYNPTGL 331


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,010,078
Number of extensions: 38876
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)