BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0191.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313700|ref|YP_003777792.1| sedoheptulose 7-phosphate isome...   271   4e-74
gi|300313953|ref|YP_003778045.1| phosphoheptose isomerase [Herba...   131   3e-32

>gi|300313700|ref|YP_003777792.1| sedoheptulose 7-phosphate
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  271 bits (692), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 155/193 (80%)

Query: 1   MHSAVETLRKNMNASIEAKQGFLLREEQLDIFEQAVRTVIERYKRGGRLYIAGNGGSAAD 60
           M S +  L++N++ASI AKQ  +     L +F+ AV   I  Y+ G R+YIAGNGGSAAD
Sbjct: 1   MSSPLLRLQRNLDASIRAKQQLMQESATLAVFDAAVAATIAAYRNGRRIYIAGNGGSAAD 60

Query: 61  AQHLAAEFVSKLARDRAPLPAEALTVDTSILTAIGNDYGYEQVFSRQIAGKMTDKDVFLG 120
           AQHLAAEFVSKLARDRAPLPAEALT D+SILTAIGNDYGYEQVFSRQ+AGK    D+FLG
Sbjct: 61  AQHLAAEFVSKLARDRAPLPAEALTTDSSILTAIGNDYGYEQVFSRQLAGKAVAGDIFLG 120

Query: 121 ITTSGQSPNILKALETCRQMGIPSVVFAGRDGGLAKAAADYCVVASGEMTSTIQEIHIVL 180
           ITTSG+SPNIL+ALE CR MG+PS++F GRDGG A+  AD+ +V  GE TSTIQE+HIVL
Sbjct: 121 ITTSGRSPNILRALEQCRAMGVPSILFTGRDGGPARPLADHAIVVPGEATSTIQELHIVL 180

Query: 181 AHTLCECVERAVF 193
           AHTLCE VE A+F
Sbjct: 181 AHTLCESVEAALF 193


>gi|300313953|ref|YP_003778045.1| phosphoheptose isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score =  131 bits (330), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 98/165 (59%), Gaps = 3/165 (1%)

Query: 32  FEQAVRTVIERYKRGGRLYIAGNGGSAADAQHLAAEFVSKLARDRAPLPAEALTVDTSIL 91
            EQA+  +      G ++   GNGGSAAD+QH AAE V +  R+R PLPA ALT DTSIL
Sbjct: 28  IEQAIELMFTALSNGNKILACGNGGSAADSQHFAAELVGRFERERLPLPALALTTDTSIL 87

Query: 92  TAIGNDYGYEQVFSRQIAGKMTDKDVFLGITTSGQSPNILKALETCRQMGIPSVVFAGRD 151
           TA+GNDY Y+++FS+Q+       D+ L  +TSG S NIL A+E   +  +  V   G+ 
Sbjct: 88  TAVGNDYSYQEIFSKQVQAFGQSGDILLAFSTSGNSGNILAAIEVAHERDMRVVALTGKG 147

Query: 152 GGLAKAA---ADYCVVASGEMTSTIQEIHIVLAHTLCECVERAVF 193
           GG        AD  +    + T+ IQE+H+V  H +C+ ++ A+F
Sbjct: 148 GGKIGKVLNDADVHICVPHDRTARIQEVHLVTLHCICDGIDVALF 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 565,994
Number of extensions: 22696
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)