BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0188.p (460 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPas... 88 1e-18 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 88 1e-18 gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 87 3e-18 gi|300313433|ref|YP_003777525.1| cell division ATPase [Herbaspir... 84 2e-17 gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibioti... 84 3e-17 >gi|300313359|ref|YP_003777451.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 303 Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 13/215 (6%) Query: 40 KQYHKEFWALRDVSFEVGRGEIVGILGRNGSGKSTLLQIICGVMQASSGRVRVKGRI--- 96 K+ ++ AL VS + GE G+LG NG+GK+TL+ II G+ +A SG V + G Sbjct: 10 KKRYQSLQALGGVSLAIEEGEFFGLLGPNGAGKTTLISIIAGLNRADSGTVTIHGHDVVS 69 Query: 97 ---SALLELGA-----GFNPEFTGRENVILNGAIHGFSRKQMLERMDEIEAFADIGEFFD 148 +A ++LG F+P FT RE + + G S + +DE+ D+ D Sbjct: 70 DYRAARMKLGVVPQELVFDPFFTVRETLRMQSGYFGLSSND--KWIDEVMENLDLTNKAD 127 Query: 149 QPIKLYSSGMFVRVAFAAAIHVEPEILVVDEALSVGDSKFQHRCFQRIRSFMEAGKTILV 208 ++ S GM RV A A+ +P ++V+DE + D + + +Q I G TI++ Sbjct: 128 TNMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWQFIGRLNREGHTIVL 187 Query: 209 VSHSTDTLLRICDRGVVMDKGEMVLVGDIASAVNR 243 +H + +C+R ++ G++V + + R Sbjct: 188 TTHYLEEAQALCNRIAMLKFGKVVALDSTEGLIRR 222 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 22/209 (10%) Query: 48 ALRDVSFEVGRGEIVGILGRNGSGKSTLLQIICGVMQASSGRVRV--------------- 92 AL+D+ E+ G I GI+GR+G+GKS+LL+ I + + +SGRV V Sbjct: 57 ALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDETQLVA 116 Query: 93 -KGRISALLELGAGFN--PEFTGRENVILNGAIHGFSRKQMLERMDEIEAFADIGEFFDQ 149 + RI + + FN T +N+ L + G R Q+ +R+ E+ A + + D Sbjct: 117 LRRRIGMIFQ---HFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDKADS 173 Query: 150 PIKLYSSGMFVRVAFAAAIHVEPEILVVDEALSVGDSKFQHRCFQRIRSF-MEAGKTILV 208 + S G RV A A+ PEIL+ DEA S D + Q +R + G TI++ Sbjct: 174 YPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITIIL 233 Query: 209 VSHSTDTLLRICDRGVVMDKGEMVLVGDI 237 ++H + I DR +V+++G + +G++ Sbjct: 234 ITHEMSVIREIADRVLVLEQGRVAELGEV 262 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 17/214 (7%) Query: 33 EALHPLRKQYHKEFWALRDVSFEVGRGEIVGILGRNGSGKSTLLQIICGVMQASSGRVRV 92 E LH + ++ ALRD++ ++ +GE+ GI+GR+G+GKSTL++ + + + SGRV + Sbjct: 5 EQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSGRVLI 64 Query: 93 KGR------ISALLELGAGFNPEF---------TGRENVILNGAIHG-FSRKQMLERMDE 136 G ALL L F T +N+ I G +SR++ R+DE Sbjct: 65 DGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAARVDE 124 Query: 137 IEAFADIGEFFDQPIKLYSSGMFVRVAFAAAIHVEPEILVVDEALSVGDSKFQHRCFQRI 196 + + DQ S G RV A A+ P +L+ DEA S D + + + Sbjct: 125 LLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSILRLL 184 Query: 197 RSF-MEAGKTILVVSHSTDTLLRICDRGVVMDKG 229 + G TI++++H + + ICDR V+D G Sbjct: 185 LEINRKLGLTIVLITHEMEVIRSICDRVAVLDGG 218 >gi|300313433|ref|YP_003777525.1| cell division ATPase [Herbaspirillum seropedicae SmR1] Length = 230 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 111/212 (52%), Gaps = 24/212 (11%) Query: 40 KQYHKEFWALRDVSFEVGRGEIVGILGRNGSGKSTLLQIICGVMQASSGRVRVKG----- 94 KQY +E +ALRD++ V +GE++ + G +G+GKSTLL++I + + ++G++ V G Sbjct: 9 KQYAREVYALRDITLSVRKGELIFLAGPSGAGKSTLLKMIAAIERPTAGKLAVNGTDIGG 68 Query: 95 -RISALLELGAGFNPEFTGRE---------NVILNGAIHGFSRKQMLER----MDEIEAF 140 + S L L F ++ NV+L + G SR+ R +D+++ Sbjct: 69 LKASGLPYLRRNLGLIFQQQKLLLDRNLLSNVMLPLIVTGSSRQDAERRARAALDKVDL- 127 Query: 141 ADIGEFFDQPIKLYSSGMFVRVAFAAAIHVEPEILVVDEALSVGDSKFQHRCFQRIRSFM 200 +G+ +P++L S G RVA A AI P+I++ DE + D ++ ++SF Sbjct: 128 --LGKAMCEPMEL-SGGEQQRVAIARAIVNRPQIILADEPTANLDRANANKVLAALKSFH 184 Query: 201 EAGKTILVVSHSTDTLLRICDRGVVMDKGEMV 232 G T L+ +H + L DR + +D+G +V Sbjct: 185 GVGVTCLISTHD-EQFLTGADRIIYLDRGRIV 215 >gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibiotic ATPase/permease fusion exporter protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 106/207 (51%), Gaps = 24/207 (11%) Query: 44 KEFWALRDVSFEVGRGEIVGILGRNGSGKSTLLQIICGVMQASSGRVRVKG-RISALLE- 101 KE LR++S + GE VGI+GR+GSGKSTLL+ + G+ QA G V + G ++A E Sbjct: 357 KETPTLRNISLTIQPGEKVGIVGRSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEE 416 Query: 102 ---LGAGFNPE----FTGR--ENVILNGAIHGFSRKQMLERMDEIEAFADI---GEF-FD 148 GF P+ F G N+ + + G Q+ E + + D+ GE D Sbjct: 417 VRMRCIGFKPQEPFLFDGTVAANIFVGDRVPG----QVYEAALAVSSLDDLIARGELRLD 472 Query: 149 QPIKL---YSSGMFVRVAFAAAIHVEPEILVVDEALSVGDSKFQHRCFQRIRSFMEAGKT 205 Q IK S G VA A I P IL++DE + D + + R +R+ + G+T Sbjct: 473 QLIKAPGNLSGGQRQMVALARVIACTPRILLLDEPTTGIDQQTEARIIERLVGY-AGGRT 531 Query: 206 ILVVSHSTDTLLRICDRGVVMDKGEMV 232 ++V +HS LLR DR VV+D G +V Sbjct: 532 LVVATHSP-ALLRHMDRIVVIDGGRIV 557 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,432,426 Number of extensions: 61483 Number of successful extensions: 490 Number of sequences better than 1.0e-08: 100 Number of HSP's gapped: 393 Number of HSP's successfully gapped: 108 Length of query: 460 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 372 Effective length of database: 1,203,190 Effective search space: 447586680 Effective search space used: 447586680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)