BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0184.p
         (720 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312517|ref|YP_003776609.1| hypothetical protein Hsero_3219...   130   5e-31

>gi|300312517|ref|YP_003776609.1| hypothetical protein Hsero_3219
           [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 151/296 (51%), Gaps = 16/296 (5%)

Query: 101 DIEFHHTAPFPSLERPFVFHCESFAPIFFPFAHQGTGSLVATDDLRSHYKAI---FEHPL 157
           D  F HTAP  +  +P++FH ESF  IFFPF   G    +   D + ++K I   F    
Sbjct: 41  DALFLHTAPLYAGSKPWIFHFESFPSIFFPFIDTGETRNLQLKD-KGYFKDIENAFLSAQ 99

Query: 158 CLGISSHLPQTLGDISRFFGSSLIDERLFSSRIGMHVDASVSRPVTKGPLDAPLFLFINS 217
           C  I SH+  ++  + R F S +I  +L    +G+++++            +   LF NS
Sbjct: 100 CRAIFSHVKSSIEVMQRVFESDVIRRKLHYVPLGINIESPTEALRKFDTPSSLHILFTNS 159

Query: 218 ANQNRGNFFLRGGHLALRYWQALFPEPGAGRLIMRCARPIDALLADNGVDLDWLRRHERR 277
            +Q+  +F+LRGGH  LR +  L        L +  + P D        DLD +R     
Sbjct: 160 LHQDPRSFYLRGGHHLLRAFSTLRRRHPNLHLTILSSVPEDLGKWFQQADLDGVR----- 214

Query: 278 SIIWIEDYLSADDLDALMRTAHVFLLPSASLHSVSIMQAMNAGAVPVVTDTLGTDRYVAD 337
              WI   +S D+L  L  + H+F LPSA LHS SI++AM +G VP+V+D LG + Y+A 
Sbjct: 215 ---WINHRISDDELRQLYFSHHMFALPSAGLHSFSILRAMASGCVPIVSDALGYEEYLAP 271

Query: 338 DVDGIV-LKGVYASNWHRDEKTGVMIDRYQR-NPALDDSLVQQLLSRLGELLANPD 391
             D ++ + GV  S ++ D   G + D YQ    A+  ++V+QL  ++ + L NPD
Sbjct: 272 QEDSVMRIFGVRESVYY-DHPEGWVSDDYQGFRQAILPAMVEQLEQQISDHL-NPD 325


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,288,093
Number of extensions: 98627
Number of successful extensions: 232
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 628
Effective length of database: 1,184,250
Effective search space: 743709000
Effective search space used: 743709000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 134 (56.2 bits)