BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0180.p
         (440 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312402|ref|YP_003776494.1| sulfate adenylyltransferase sub...   261   1e-70

>gi|300312402|ref|YP_003776494.1| sulfate adenylyltransferase
           subunit 2 protein [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  261 bits (666), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 139/299 (46%), Positives = 188/299 (62%), Gaps = 8/299 (2%)

Query: 146 HLKRLEAESIHILREAVAEAQNPVMLYSIGKDSGVMLHLARKAFYPAPPPFPLLHIDTRW 205
           HL  LE+E+IHI+RE  AE   P +L+S GKDS V+L +A KAF P   PFPL+HIDT  
Sbjct: 17  HLDWLESEAIHIMREVAAECSTPALLFSGGKDSVVLLRIAEKAFRPGKFPFPLVHIDTGH 76

Query: 206 KFQEMYLFRDFMARESGMELLVHTNPEAIAKNINPFDHGSALHTDITKTEGLKQALEHHR 265
            F E+  FRD  A E G  L+V +  ++I +      +      +  +   L + +E  +
Sbjct: 77  NFPEVIEFRDRRAAELGERLVVRSVEDSIKRGTVRLRNPQTDSRNAAQAVTLLETIEEFK 136

Query: 266 FDVVFGGARRDEEKSRAKERVFSFRTAAHRWDPKNQRPELWNLYNTRKSPGESIRVFPLS 325
           FD   GGARRDEEK+RAKER+FSFR    +W+PK QRPELW+LYNTR  PGE++RVFP+S
Sbjct: 137 FDACIGGARRDEEKARAKERIFSFRDEFGQWNPKAQRPELWDLYNTRVHPGENMRVFPIS 196

Query: 326 NWTELDIWQYIYQENIPMVPLYFAKPRPVVVRPEMIMMVDDDRSRLLP---GEEIRIETV 382
           NWTELD+WQYI +E + +  +YFA  R V+ R  +++ + D    L P   GE +  + V
Sbjct: 197 NWTELDVWQYIAREKLALPSIYFAHEREVIPRNGLLVPLTD----LTPAREGETVEKQVV 252

Query: 383 RFRTLGCYPLTGAVPSRAETVEDILLEIIHTRQSERQGRKIDTD-SAGSMEKKKQEGYF 440
           RFRT+G    T  V S A +VE I+ E   T+ +ER   ++D   S  SMEK+K+EGYF
Sbjct: 253 RFRTVGDISCTCPVSSDAASVEAIIAETAVTQITERGATRMDDQTSEASMEKRKKEGYF 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,403,571
Number of extensions: 59220
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,203,190
Effective search space: 423522880
Effective search space used: 423522880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)