BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0175.p (1405 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein [Her... 2696 0.0 gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer... 121 4e-28 >gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein [Herbaspirillum seropedicae SmR1] Length = 1422 Score = 2696 bits (6988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1394/1405 (99%), Positives = 1397/1405 (99%) Query: 1 LLPPSLTVRVGRRRLTLSWRARKPLPQLLAGLLRRSWTRLLAPALRISVATAAVCGAWQA 60 LLPPSLTVRVGRRRLTLSWRARKPLPQLLAGLLRRSWTRLLAPALRISVATAAVCGAWQA Sbjct: 18 LLPPSLTVRVGRRRLTLSWRARKPLPQLLAGLLRRSWTRLLAPALRISVATAAVCGAWQA 77 Query: 61 PVLAAAPAPGTLPTGWSVVNGNVTFTQNGNILNINQLSPQAIAQFLSFSIGADATVNVNQ 120 PVLAAAPAPGTLPTGWSVVNGNVTF QNGNILNINQLSPQAIAQFLSFSIGADATVNVNQ Sbjct: 78 PVLAAAPAPGTLPTGWSVVNGNVTFIQNGNILNINQLSPQAIAQFLSFSIGADATVNVNQ 137 Query: 121 PSAAAALLAKVSGGDISQIYGKLSATGTVVLYNPNGVVIGPSGSIDAGRFIATSLAISDS 180 PSAAAALLAKVSGGDISQIYGKLSATGTVVLYNPNGVVIGPSGSIDAGRFIATSLAISDS Sbjct: 138 PSAAAALLAKVSGGDISQIYGKLSATGTVVLYNPNGVVIGPSGSIDAGRFIATSLAISDS 197 Query: 181 DFLAGKLNFARQGNAGIVDNQGKIQSATGGSVYLIGSSVSNSGIIKSAQGEVILAAGETV 240 DFLAGKLNFARQGNAGIVDNQGKIQSATGGSVYLIGSSVSNSGIIKSAQGEVILAAGETV Sbjct: 198 DFLAGKLNFARQGNAGIVDNQGKIQSATGGSVYLIGSSVSNSGIIKSAQGEVILAAGETV 257 Query: 241 TLADTATPGVTVNVTGSAGNVTNLGSITAEAGRIGVAAGLINNSGVINASSVVREGGRIF 300 TLADTATPGVTVNVTGSAGNVTNLGSITAEAGRIGVAAGLINNSGVINASSVVREGGRIF Sbjct: 258 TLADTATPGVTVNVTGSAGNVTNLGSITAEAGRIGVAAGLINNSGVINASSVVREGGRIF 317 Query: 301 LRASQNLNTSASSSIHADGSRGGNIALVAQDQAFIDGDVSATGAPGQGGFVETSGLKRLD 360 LRASQNL TSASSSIHADGSRGGNIALVAQDQAFIDGDVSATGAPGQGGFVETSGLKRLD Sbjct: 318 LRASQNLTTSASSSIHADGSRGGNIALVAQDQAFIDGDVSATGAPGQGGFVETSGLKRLD 377 Query: 361 VVKAPTLGAGGTWLIDPSDLEVVSGGSRTVSTSTGNGSYAISANGSSSQIGADTIVGQLE 420 VVKAPTLGAGGTWLIDPSDLEVVSGGSRTVSTSTGNGSYAISANGSSSQIGADTIVGQLE Sbjct: 378 VVKAPTLGAGGTWLIDPSDLEVVSGGSRTVSTSTGNGSYAISANGSSSQIGADTIVGQLE 437 Query: 421 AGVNVTLATGADGSQAGNITVSSAIVKEAGGAASLTLNAANNISINADIRSTSGALTLTL 480 AGVNVTLATGADGSQAGNITVSSAIVK+AGGAASLTLNAANNISINADIRSTSGALTLTL Sbjct: 438 AGVNVTLATGADGSQAGNITVSSAIVKQAGGAASLTLNAANNISINADIRSTSGALTLTL 497 Query: 481 HTGTGEGVDFSAARQSTIGNGARISLNGGDLYAMDGVEGRGNLLISNGSVWLDGTSTLRA 540 HTG GEGVDFSAARQSTIGNGARISLNGGDLYAMDGVEGRGNLLISNGSVWLDGTSTLRA Sbjct: 498 HTGAGEGVDFSAARQSTIGNGARISLNGGDLYAMDGVEGRGNLLISNGSVWLDGTSTLRA 557 Query: 541 GRLQLDGGGSLVYASGNSSVTLNDALINNGTIQVNASGRLYSDGGVYNNGNLSLADGTSL 600 GRLQLDGGGSLVYASGNSSVTLNDALINNGTIQVNASGRLYSDGGVYNNGNLSLADGTSL Sbjct: 558 GRLQLDGGGSLVYASGNSSVTLNDALINNGTIQVNASGRLYSDGGVYNNGNLSLADGTSL 617 Query: 601 MASSTSLSNNGTVTLSNGTLNFSSITNNQNATILGSGSLVAAEGVVNNGVLAPGGDGIIG 660 MASSTSLSNNGTVTLSNGTLNFSSITNNQNATILGSGSLVAAEGVVNNGVLAPGGDGIIG Sbjct: 618 MASSTSLSNNGTVTLSNGTLNFSSITNNQNATILGSGSLVAAEGVVNNGVLAPGGDGIIG 677 Query: 661 NLTIAGNYTQGDTGAMLIDVTPAGSNDNVVFSGAFAHLGGMLKTHVLGNVSEVAEGSNFM 720 NLTIAGNYTQGDTGAMLIDVTPAGSNDNVVFSGAFAHLGGMLKTHVLGNVSEVAEGSNFM Sbjct: 678 NLTIAGNYTQGDTGAMLIDVTPAGSNDNVVFSGAFAHLGGMLKTHVLGNVSEVAEGSNFM 737 Query: 721 PFNFQSTSLGDSYFRYVSGDVSNIDGIKTMLKANYTEGPLRLTMMRSTTFYASGSNSYWG 780 PFNFQSTSLGDSYFRYVSGDVSNIDGIKTMLKANYTEGPLRLTMMRSTTFYASGSNSYWG Sbjct: 738 PFNFQSTSLGDSYFRYVSGDVSNIDGIKTMLKANYTEGPLRLTMMRSTTFYASGSNSYWG 797 Query: 781 ARETWSGGGSTYLPTEIDTVVIDSNNTVTLSDGVGDKISRLQVKGSGQFNQTGGALTVVN 840 ARETWSGGGSTYLPTEIDTVVIDSNNTVTLSDGVGDKISRLQVKGSGQFNQTGGALTVVN Sbjct: 798 ARETWSGGGSTYLPTEIDTVVIDSNNTVTLSDGVGDKISRLQVKGSGQFNQTGGALTVVN 857 Query: 841 GAVIDGTVDISGGSFTSNGSNSVTGSVTLGMQDSGVRGNATLAGWTSVRSGAQINVNGGT 900 GAVIDGTVDISGGSFTSNGSNSVTGSV LGMQD GVRGNATLAGWTSVRSGAQINVNGGT Sbjct: 858 GAVIDGTVDISGGSFTSNGSNSVTGSVALGMQDGGVRGNATLAGWTSVRSGAQINVNGGT 917 Query: 901 LNFSGTSNLLEGSTVDLSAGQLTFNGTSNLAGTVTVRGGTLTTAGDTTLSGNMQVNSGNV 960 LNF+GTSNLLEGSTVDLSAGQLTFNGTSNLAGTVTVRGGTLTTAGDTTLSGNMQVNSGNV Sbjct: 918 LNFNGTSNLLEGSTVDLSAGQLTFNGTSNLAGTVTVRGGTLTTAGDTTLSGNMQVNSGNV 977 Query: 961 TLGGVTDGAGRLTLGTAGSNEGNDDGGNLIALPPVGDGSVTIANASHSSLNVDLNSGDLT 1020 TLGGVTDG GRLTLGTAGSNEGNDDGGNLIALPPVGDGSVTIANASHSSLNVDLNSGDLT Sbjct: 978 TLGGVTDGTGRLTLGTAGSNEGNDDGGNLIALPPVGDGSVTIANASHSSLNVDLNSGDLT 1037 Query: 1021 LGGDVRLAALNVTQGNVTGNIGSRLVVAESFQQTGGNLTLADAALSQSNGSLIVGNITAN 1080 LGGDVRLAALNVTQGNVTGNIGSRLVVAESFQQTGGNLTLADAALSQSNGSLIVGNITAN Sbjct: 1038 LGGDVRLAALNVTQGNVTGNIGSRLVVAESFQQTGGNLTLADAALSQSNGSLIVGNITAN 1097 Query: 1081 NLVLEAQSANIFQQTGSALHVKQQLITSATDGISLTETGNQIAGFAANNQGSGDIRLINQ 1140 NLVLEAQSANIFQQ+GSALHVKQQLITSATDGISLTETGNQIAGFAANNQGSGDIRLINQ Sbjct: 1098 NLVLEAQSANIFQQSGSALHVKQQLITSATDGISLTETGNQIAGFAANNQGSGDIRLINQ 1157 Query: 1141 LNTADASVVTINGVHTVHGDIHIDNTGGMRTAALGDSASFLGALPSSTEGDPPGTAAKLA 1200 LNTADASVVTINGVHTVHGDIHIDNTGGMRTAALGDSASFLGALPSS EGDPPGTAAKLA Sbjct: 1158 LNTADASVVTINGVHTVHGDIHIDNTGGMRTAALGDSASFLGALPSSAEGDPPGTAAKLA 1217 Query: 1201 MLGMSSNTNGQVKTDNGAVTMVTHSPMAIGAGGVSATGDITLTASASAGSNDTLVVNGVL 1260 MLGMSSNTNGQVKTDNGAVTMVTHSPMAIGAGGVSATGDITLTASASAGSNDTLVVNGVL Sbjct: 1218 MLGMSSNTNGQVKTDNGAVTMVTHSPMAIGAGGVSATGDITLTASASAGSNDTLVVNGVL 1277 Query: 1261 VSLGGNIRLSAGDSMTINANISTSPPGVALFSVDSGAVIGYAQGVRIVDANGTRIPVPAS 1320 VSLGGNIRLSAGDSMTINANISTSPPGVALFSVDSGAVIGYAQGVRIVDANGTRIPVPAS Sbjct: 1278 VSLGGNIRLSAGDSMTINANISTSPPGVALFSVDSGAVIGYAQGVRIVDANGTRIPVPAS 1337 Query: 1321 ATSSAGGGGNTQTSQAVQQQQNQQSQNLQATVNSARLSDPNAQSTGNPVQQSSGGGQTVG 1380 ATSSAGGGGNTQTSQAVQQQQNQQSQNLQATVNSARLSDPNAQSTGNPVQQSS GGQTVG Sbjct: 1338 ATSSAGGGGNTQTSQAVQQQQNQQSQNLQATVNSARLSDPNAQSTGNPVQQSSSGGQTVG 1397 Query: 1381 GTAGSFGDDSGGDSKAARKALPMCT 1405 GTAGSFGDDSGGDSKAARKALPMCT Sbjct: 1398 GTAGSFGDDSGGDSKAARKALPMCT 1422 >gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 1568 Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 105/325 (32%), Positives = 159/325 (48%), Gaps = 28/325 (8%) Query: 9 RVGRRRLTLSWRARKPLPQLLAGLLRRSWTRLLAPALRISVATAAVCGAWQAPVLAAAPA 68 R+ R + +A + ++ G +R+ +++A AL +S P+LA A Sbjct: 9 RIYRLVWSHVHQAWVVVSEVSRGQGKRANRKVIAAALLVS------------PLLAQAA- 55 Query: 69 PGTLPTGWSVVNGNVTFTQNGNILNINQLSPQAIAQFLSFSIGADATVNVNQPSAAAALL 128 P G V G + +Q+GN I Q S + SF+ + TVN QPSA+A + Sbjct: 56 ----PVGGQVTAGAGSISQSGNTTTITQSSQNLSVNWQSFNTASHETVNFIQPSASAIAV 111 Query: 129 AKVSGGDISQIYGKLSATGTVVLYNPNGVVIGPSGSIDAGRFIATSLAISDSDFLAGKLN 188 ++ + ++ +G+L+A G V L NPNGV+ G ++ G +A++L +SD+ A N Sbjct: 112 NRIYDTNPTRFFGQLNANGQVYLINPNGVLFGAGSQVNVGGLVASTLDMSDASLAAAARN 171 Query: 189 FARQGNAGIVDNQGKIQSATGGSVYLIGSSVSNSGIIKSAQGEVILAAGETVTLADTATP 248 F+ G I+ NQG I A GG V IG++VSN G I + G V LAAG VTL Sbjct: 172 FSGSGTGSII-NQGDISVANGGYVAFIGNTVSNQGNITAPAGTVALAAGNDVTLTFANAS 230 Query: 249 GVTVNVTGSAGN--VTNLGSITAEAGRIGVAAG--------LINNSGVINASSVVREGGR 298 V + V + N N G I A+ G + ++AG ++NN+G+I A SV GR Sbjct: 231 LVKLQVNQNTLNNLSENGGLILADGGAVLMSAGAKDAVLASVVNNTGIIEARSVQNVNGR 290 Query: 299 IFLRASQNLNTSASSSIHADGSRGG 323 I L S S ++ A G G Sbjct: 291 IVLDGGNLATVSNSGTLDASGKNAG 315 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.310 0.128 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,960,311 Number of extensions: 170606 Number of successful extensions: 834 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 722 Number of HSP's successfully gapped: 11 Length of query: 1405 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1308 Effective length of database: 1,160,575 Effective search space: 1518032100 Effective search space used: 1518032100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 137 (57.4 bits)