BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0169.p
         (501 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309654|ref|YP_003773746.1| sulfate permease family protein...   985   0.0  

>gi|300309654|ref|YP_003773746.1| sulfate permease family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 501

 Score =  985 bits (2546), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/501 (99%), Positives = 499/501 (99%)

Query: 1   VRAELLPMTTITTPTSRLRDLRQNVLAGLTTSFALVPECIAFALVAQLNPLMGLYGAFFI 60
           +RAELLPMTTITTPTSRLRDLRQNVLAGLTTSFALVPECIAFALVAQLNPLMGLYGAFFI
Sbjct: 1   MRAELLPMTTITTPTSRLRDLRQNVLAGLTTSFALVPECIAFALVAQLNPLMGLYGAFFI 60

Query: 61  CTITALFGGRPGMISGAAGSMAVVIVALVVQHGAQYFLATVVLSGLIMLAFGALRLGKLV 120
           CTITALFGGRPGMISGAAGSMAVVIVALVVQHGAQYFLATVVLSGLIMLAFGALRLGKLV
Sbjct: 61  CTITALFGGRPGMISGAAGSMAVVIVALVVQHGAQYFLATVVLSGLIMLAFGALRLGKLV 120

Query: 121 RMVPHPVMLGFVNGLAIVIALSQLEHFRIATATGTQWLQGSALWVMIALTLATMLIVWLL 180
           RMVPHPVMLGFVNGLAIVIALSQLEHFRIATA GTQWLQGSALWVMIALTLATMLIVWLL
Sbjct: 121 RMVPHPVMLGFVNGLAIVIALSQLEHFRIATAAGTQWLQGSALWVMIALTLATMLIVWLL 180

Query: 181 PRVTKAVPPALAAILGVGLVTYASGLHTRTLADMAQIAGGLPPLHLPSVPLTLETLRIIG 240
           PRVTKAVPPALAAILGVGLVTYASGLHTRTLADMAQIAGGLPPLHLPSVPLTLETLRIIG
Sbjct: 181 PRVTKAVPPALAAILGVGLVTYASGLHTRTLADMAQIAGGLPPLHLPSVPLTLETLRIIG 240

Query: 241 PYAVLMAIVGLLETLLTFNLTDEITATRGQPNRECLALGAANIVSGLFGGMGGCAMIGQT 300
           PYAVLMAIVGLLETLLTFNLTDEITATRGQPNRECLALGAANIVSGLFGGMGGCAMIGQT
Sbjct: 241 PYAVLMAIVGLLETLLTFNLTDEITATRGQPNRECLALGAANIVSGLFGGMGGCAMIGQT 300

Query: 301 MINLGSGGRSRLSGVVAGVMILLFILFLSPAIERIPLAALAGVMFVVAQETFAWGSLRVL 360
           MINLGSGGRSRLSGVVAGVMILLFILFLSPAIERIPLAALAGVMFVVAQETFAWGSLRVL
Sbjct: 301 MINLGSGGRSRLSGVVAGVMILLFILFLSPAIERIPLAALAGVMFVVAQETFAWGSLRVL 360

Query: 361 GKVPRSDALVIIAVTVITVLTDLAVAVLCGIVITALNFAWQHAREVRSDVRDEDDGSRTY 420
           GKVPRSDALVIIAVTVITVLTDLAVAVLCGIVI ALNFAWQHAREVRSDVRDEDDGSRTY
Sbjct: 361 GKVPRSDALVIIAVTVITVLTDLAVAVLCGIVIAALNFAWQHAREVRSDVRDEDDGSRTY 420

Query: 421 VPHGTLFFASTTHFLALFDTGNDPQEVTLDCRHLRLADHSAIAAVQTLAERYTRMGKQLR 480
           +PHGTLFFASTTHFLALFDTGNDPQEVTLDCRHLRLADHSAIAAVQTLAERYTRMGKQLR
Sbjct: 421 LPHGTLFFASTTHFLALFDTGNDPQEVTLDCRHLRLADHSAIAAVQTLAERYTRMGKQLR 480

Query: 481 VVALSQRCSQLLQRAGLPQVA 501
           VVALSQRCSQLLQRAGLPQVA
Sbjct: 481 VVALSQRCSQLLQRAGLPQVA 501


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,427,088
Number of extensions: 56912
Number of successful extensions: 329
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 412
Effective length of database: 1,198,455
Effective search space: 493763460
Effective search space used: 493763460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)