BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0151.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent...   558   e-160

>gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent
           methyltransferase MraW protein [Herbaspirillum
           seropedicae SmR1]
          Length = 324

 Score =  558 bits (1438), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 297/319 (93%), Positives = 300/319 (94%), Gaps = 11/319 (3%)

Query: 1   VPELQHRTVLLEEAVDALAIEGERANGVYLDGTFGRGGHSRAILSRLGPQGRLIAFDKDP 60
           VPELQHRTVLLEEAVDALAIEGERANGVYLDGTFGRGGHSRAILSRLGPQGRLIAFDKDP
Sbjct: 6   VPELQHRTVLLEEAVDALAIEGERANGVYLDGTFGRGGHSRAILSRLGPQGRLIAFDKDP 65

Query: 61  LAIATAQKIADPRFEIVHESFATMDQALAERGIARVDGVLMDLGISSPQVDDAARGFSFR 120
           LAIATAQKIADPRFEIVH+SFATMDQALAERGIARVDGVLMDLGISSPQVDDAARGFSFR
Sbjct: 66  LAIATAQKIADPRFEIVHDSFATMDQALAERGIARVDGVLMDLGISSPQVDDAARGFSFR 125

Query: 121 LDGPLDMRMDTTRGVSAAEWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRAVEPISS 180
           LDGPLDMRMDTTRGVSAAEWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRAVEPISS
Sbjct: 126 LDGPLDMRMDTTRGVSAAEWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRAVEPISS 185

Query: 181 TRQLAALVAQAVKTREKGKDPATRTFQAVRIFVNQELEELEVGLEKAFAQMAQHGRLVVI 240
           TRQLAALVAQAVKTREKGKDPATRTFQAVRIFVNQELEELEVGLEKAFAQMAQHGRLVVI
Sbjct: 186 TRQLAALVAQAVKTREKGKDPATRTFQAVRIFVNQELEELEVGLEKAFAQMAQHGRLVVI 245

Query: 241 SFHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPXTAACRFVPS-----------T 289
           SFHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAP     R +PS           +
Sbjct: 246 SFHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPRVMPSAGEVEANPRARS 305

Query: 290 CRMRGLELIVAAPAQGASA 308
             MRGLELIVAAPAQGASA
Sbjct: 306 AVMRGLELIVAAPAQGASA 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 952,602
Number of extensions: 39500
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)