BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0145.p
         (730 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309676|ref|YP_003773768.1| UDP-N-acetylmuramoylalanine-D-g...  1406   0.0  

>gi|300309676|ref|YP_003773768.1|
           UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 710

 Score = 1406 bits (3639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/710 (99%), Positives = 709/710 (99%)

Query: 21  MNYSGKHVLVLGLGESGLAMARWLVYCGASVRVADTRGEAALAERLAALRADAPEAQAVL 80
           MNYSGKHVLVLGLGESGLAMARWLVYCGASVRVADTRGEAALAERLAALRADAPEAQAVL
Sbjct: 1   MNYSGKHVLVLGLGESGLAMARWLVYCGASVRVADTRGEAALAERLAALRADAPEAQAVL 60

Query: 81  GQPLSPALLEGVDFVAVSPGLAPEGELAPLMPAIAERSLPLWGEIELFAQALVALREETL 140
           GQPLSPALLEGVDFVAVSPGLAPEGELAPLMPAIAERSLPLWGEIELFAQALVALREETL
Sbjct: 61  GQPLSPALLEGVDFVAVSPGLAPEGELAPLMPAIAERSLPLWGEIELFAQALVALREETL 120

Query: 141 YQPKVLAITGTNGKTTVTRLTGLLCQRAGLSVQVAGNISPAALDVLREAVIRDKVFLAEL 200
           YQPKVLAITGTNGKTTVTRLTGLLCQRAGLSVQVAGNISPAALDVLREAVIRDKVFLAEL
Sbjct: 121 YQPKVLAITGTNGKTTVTRLTGLLCQRAGLSVQVAGNISPAALDVLREAVIRDKVFLAEL 180

Query: 201 AEQDALAAAQAAAEAEAQAAQQAVLDAQQEAEAEKHRRAAARIEEAASIAVPALQSHPVA 260
           AEQDALAAAQAAAEAEAQAAQQAVLDAQQEAEAEKHRRAAARIEEAASIAVP LQSHPVA
Sbjct: 181 AEQDALAAAQAAAEAEAQAAQQAVLDAQQEAEAEKHRRAAARIEEAASIAVPVLQSHPVA 240

Query: 261 PASLSESEQETAAQLDLLDAADASGEHAQDHQPPAADVSPSAAEAASQVDASAADEPDTS 320
           PASLSESEQETAAQLDLLDAADASGEHAQDHQPPAADVSPSAAEAASQVDASAADEPDTS
Sbjct: 241 PASLSESEQETAAQLDLLDAADASGEHAQDHQPPAADVSPSAAEAASQVDASAADEPDTS 300

Query: 321 ERVATDEADAVAQDASAAAAAATLDVASDVVPQAQPDAPATTGEAMNLGDFMEVSRKAEE 380
           ERVATDEADAVAQDASAAAAAATLDVASDVVPQAQPDAPATTGEAMNLGDFMEVSRKAEE
Sbjct: 301 ERVATDEADAVAQDASAAAAAATLDVASDVVPQAQPDAPATTGEAMNLGDFMEVSRKAEE 360

Query: 381 DALVEVPPPPPPEPTYRGSMPQAWVLELSSFQLHTTHSLQADAATVLNLTQDHLDWHGSM 440
           DALVEVPPPPPPEPTYRGSMPQAWVLELSSFQLHTTHSLQADAATVLNLTQDHLDWHGSM
Sbjct: 361 DALVEVPPPPPPEPTYRGSMPQAWVLELSSFQLHTTHSLQADAATVLNLTQDHLDWHGSM 420

Query: 441 EHYAADKARIFGQHTVRVLNRDDALVMQMAAAGSALSTFGLDEPTAPNSFGLVNDNGMLW 500
           EHYAADKARIFGQHTVRVLNRDDALVMQMAAAGSALSTFGLDEPTAPNSFGLVNDNGMLW
Sbjct: 421 EHYAADKARIFGQHTVRVLNRDDALVMQMAAAGSALSTFGLDEPTAPNSFGLVNDNGMLW 480

Query: 501 LANAFVHEDDEVPEGKRRRKQKDMLPPPVTLKRLMPADALKIRGAHNAMNALAALALCRA 560
           LANAFVHEDDEVPEGKRRRKQKDMLPPPVTLKRLMPADALKIRGAHNAMNALAALALCRA
Sbjct: 481 LANAFVHEDDEVPEGKRRRKQKDMLPPPVTLKRLMPADALKIRGAHNAMNALAALALCRA 540

Query: 561 IDLPMAPLLHGLRDYTGEPHRVELVGVIQEVDYYDDSKGTNVGATVAALNGLGLGGRPNR 620
           IDLPMAPLLHGLRDYTGEPHRVELVGVIQEVDYYDDSKGTNVGATVAALNGLGLGGRPNR
Sbjct: 541 IDLPMAPLLHGLRDYTGEPHRVELVGVIQEVDYYDDSKGTNVGATVAALNGLGLGGRPNR 600

Query: 621 IVLIAGGDGKGQDFSPLDLPVQKYARAVLLIGRDAPAIRAALADSGVELIDCASLEAAVE 680
           IVLIAGGDGKGQDFSPLDLPVQKYARAVLLIGRDAPAIRAALADSGVELIDCASLEAAVE
Sbjct: 601 IVLIAGGDGKGQDFSPLDLPVQKYARAVLLIGRDAPAIRAALADSGVELIDCASLEAAVE 660

Query: 681 KAGEIATAGDIVLLSPACASLDMFRNYAHRAEVFVDAVRELALSRGEVLA 730
           KAGEIATAGDIVLLSPACASLDMFRNYAHRAEVFVDAVRELALSRGEVLA
Sbjct: 661 KAGEIATAGDIVLLSPACASLDMFRNYAHRAEVFVDAVRELALSRGEVLA 710


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,819,806
Number of extensions: 67666
Number of successful extensions: 383
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 638
Effective length of database: 1,184,250
Effective search space: 755551500
Effective search space used: 755551500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)