BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0143.p
         (360 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309678|ref|YP_003773770.1| UDP-N-acetylglucosamine-N-acety...   717   0.0  

>gi|300309678|ref|YP_003773770.1|
           UDP-N-acetylglucosamine-N-acetylmuramyl-pentapeptide
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/360 (99%), Positives = 359/360 (99%)

Query: 1   MSAPRKLLIMAAGTGGHIFPGLAIADTMRARGWEVSWLGTSHGMERELVPRHGVEMDSIV 60
           MSAPRKLLIMAAGTGGHIFPGLAIADTMRARGWEVSWLGTSHGMERELVP HGVEMDSIV
Sbjct: 1   MSAPRKLLIMAAGTGGHIFPGLAIADTMRARGWEVSWLGTSHGMERELVPCHGVEMDSIV 60

Query: 61  FAGLRGKGLMHTVKGAWRLVASFFDCFAILGRRRPDVVLGMGGYVTVPGGAMARLRGKPL 120
           FAGLRGKGLMHTVKGAWRLVASFFDCFAILGRRRPDVVLGMGGYVTVPGGAMARLRGKPL
Sbjct: 61  FAGLRGKGLMHTVKGAWRLVASFFDCFAILGRRRPDVVLGMGGYVTVPGGAMARLRGKPL 120

Query: 121 VLVNADAALLLSNKALTPLADKVLFGFPADFGKAAGKAEVTGNPVRQEITALPPPVQRYA 180
           VLVNADAALLLSNKALTPLADKVLFGFPADFGKAAGKAEVTGNPVRQEITALPPPVQRYA
Sbjct: 121 VLVNADAALLLSNKALTPLADKVLFGFPADFGKAAGKAEVTGNPVRQEITALPPPVQRYA 180

Query: 181 GRRGPLKILVVGGSLGAKVLNETVPAALAQLPVEQRPQVTHQSGKQNIVALRAAYEAAGV 240
           GRRGPLKILVVGGSLGAKVLNETVPAALAQLP+EQRPQVTHQSGKQNIVALRAAYEAAGV
Sbjct: 181 GRRGPLKILVVGGSLGAKVLNETVPAALAQLPLEQRPQVTHQSGKQNIVALRAAYEAAGV 240

Query: 241 EAEVLDFIDDMPRRYAEADLVICRAGAITVSELTAAGVASVLVPLVVSTTSQQIENARWM 300
           EAEVLDFI+DMPRRYAEADLVICRAGAITVSELTAAGVASVLVPLVVSTTSQQIENARWM
Sbjct: 241 EAEVLDFIEDMPRRYAEADLVICRAGAITVSELTAAGVASVLVPLVVSTTSQQIENARWM 300

Query: 301 AKNKAAIHLPQRELSPDALAGLLQKLDRAACHEMAQAAYEQGRRDANEAIARVLEGLVTP 360
           AKNKAAIHLPQRELSPDALAGLLQKLDRAACHEMAQAAYEQGRRDANEAIARVLEGLVTP
Sbjct: 301 AKNKAAIHLPQRELSPDALAGLLQKLDRAACHEMAQAAYEQGRRDANEAIARVLEGLVTP 360


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,107,408
Number of extensions: 44552
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,212,660
Effective search space: 332268840
Effective search space used: 332268840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)