BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0131.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309690|ref|YP_003773782.1| lysophospholipase [Herbaspirill...   430   e-122

>gi|300309690|ref|YP_003773782.1| lysophospholipase [Herbaspirillum
           seropedicae SmR1]
          Length = 250

 Score =  430 bits (1106), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/223 (96%), Positives = 216/223 (96%)

Query: 28  PEAAPPRAGLEPAPATVAGRGAPLRLLVVGDSSAAGVGVEHQEQALAQPLARHLAERAGR 87
           PEAA PRAGLEPAPATVAG GAPLRLLVVGDSSAAGVGVEHQEQALAQPLARHLAERAGR
Sbjct: 28  PEAAGPRAGLEPAPATVAGSGAPLRLLVVGDSSAAGVGVEHQEQALAQPLARHLAERAGR 87

Query: 88  PVAWQLVAQSGVNSLEALELLARHEIGPAVVLVVALGVNDVTSQMPPRRYVANLRLLCER 147
           PVAWQLVAQSGVNSLEALELLA HEIGPA VLVVALGVNDVTSQMPP RYV NLRLLCER
Sbjct: 88  PVAWQLVAQSGVNSLEALELLAHHEIGPAAVLVVALGVNDVTSQMPPHRYVGNLRLLCER 147

Query: 148 LMAQAGVEHIVFSGLPPMHLLPVAPQPLRWYLGRYARKLDRALRDWIRSEAALRYCSLQW 207
           LMAQAGVEHIVFSGLPPMHLLPVAPQPLRWYLGRYARKLDR LRDWIRSEAALRYCSLQW
Sbjct: 148 LMAQAGVEHIVFSGLPPMHLLPVAPQPLRWYLGRYARKLDRTLRDWIRSEAALRYCSLQW 207

Query: 208 TLPHEMAIDRFHPGPGQYAQWARMSAEIIETEFLRHQPVTESV 250
           TLPHEMAIDRFHPGPGQYAQWARMSAEIIETEFLRHQPVTESV
Sbjct: 208 TLPHEMAIDRFHPGPGQYAQWARMSAEIIETEFLRHQPVTESV 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 657,405
Number of extensions: 25807
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)