BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0123.p
         (415 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309698|ref|YP_003773790.1| type II secretion system protei...   794   0.0  

>gi|300309698|ref|YP_003773790.1| type II secretion system protein
           [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/415 (98%), Positives = 412/415 (99%)

Query: 1   LPAPERSQGSRFRWEGLDRHGRPQRGVLQARDATAARQALRRDGVRVARLQPADTAAATP 60
           +PAPERSQG RFRWEGLDRHGRPQRGVLQARDATAARQALRRDGVRVARLQPADTAAATP
Sbjct: 1   MPAPERSQGGRFRWEGLDRHGRPQRGVLQARDATAARQALRRDGVRVARLQPADTAAATP 60

Query: 61  APGTSARRGRRRITDKQIVLFTRQLATMLQAGLPLLQALDIAIRGAGADALGGLLATIRQ 120
           APG SARRGRRRITDKQIVLFTRQLATMLQAGLPLLQALDIAIRGAGADALGGLLATIRQ
Sbjct: 61  APGISARRGRRRITDKQIVLFTRQLATMLQAGLPLLQALDIAIRGAGADALGGLLATIRQ 120

Query: 121 DVARGDSLHAALARHPQRFDALFCQLVRAAESAGVLDSMLARIASYREKSLALRGKVRAA 180
           DVARGDSLHAALARHPQRFDALFCQLVRAAESAGVLDSMLARIASYREKSLALRGKVRAA
Sbjct: 121 DVARGDSLHAALARHPQRFDALFCQLVRAAESAGVLDSMLARIASYREKSLALRGKVRAA 180

Query: 181 LAYPCAVVLVAVAVTVVIMLWVVPAFEQMFRHFGAELPLPTRIVMSLAHALTQAWPWLLP 240
           LAYPCAVVLVAVAVTVVIMLWVVPAFEQMFRHFGAELPLPTRIVMSLAHALTQAWPWLLP
Sbjct: 181 LAYPCAVVLVAVAVTVVIMLWVVPAFEQMFRHFGAELPLPTRIVMSLAHALTQAWPWLLP 240

Query: 241 GLAIAVLAGLQAWRRWLPLRQYAQRLSLRLPLLGGLLRQAALARWSRTFGTLLGAGIALV 300
           GLAIAVLAGLQAWRRWLPL Q+AQRLSLRLPLLGGLLRQAALARWSRTFGTLLGAGIALV
Sbjct: 241 GLAIAVLAGLQAWRRWLPLGQHAQRLSLRLPLLGGLLRQAALARWSRTFGTLLGAGIALV 300

Query: 301 QALETVAGAAGNVVIGQASLAVRDAVRNGASLHAAMQATGVFPDLAVQMTAVGEETGTLD 360
           QALETVAGAAGNVVIGQASLAVRDAVRNGASLHAAMQATGVFPDLAVQMTAVGEETGTLD
Sbjct: 301 QALETVAGAAGNVVIGQASLAVRDAVRNGASLHAAMQATGVFPDLAVQMTAVGEETGTLD 360

Query: 361 AMLIKIAELNEREVDDTVTALTSLMEPAIMTVLGLVIGGLVIALYLPVFRMGSVV 415
           AMLIKIAELNEREVDDTVTALTSLMEPAIMTVLGLVIGGLVIALYLPVFRMGSVV
Sbjct: 361 AMLIKIAELNEREVDDTVTALTSLMEPAIMTVLGLVIGGLVIALYLPVFRMGSVV 415


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 994,736
Number of extensions: 32692
Number of successful extensions: 266
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,203,190
Effective search space: 393443130
Effective search space used: 393443130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)