BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0108.p
         (456 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309714|ref|YP_003773806.1| signal recognition particle sub...   908   0.0  
gi|300313432|ref|YP_003777524.1| signal recognition particle GTP...   130   3e-31

>gi|300309714|ref|YP_003773806.1| signal recognition particle
           subunit SRP54 protein [Herbaspirillum seropedicae SmR1]
          Length = 456

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/456 (100%), Positives = 456/456 (100%)

Query: 1   MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAL 60
           MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAL
Sbjct: 1   MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAL 60

Query: 61  GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120
           GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT
Sbjct: 61  GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120

Query: 121 VGKLAKYLRETTKKKVLTVSADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAAL 180
           VGKLAKYLRETTKKKVLTVSADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAAL
Sbjct: 121 VGKLAKYLRETTKKKVLTVSADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAAL 180

Query: 181 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF 240
           DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF
Sbjct: 181 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF 240

Query: 241 SDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG 300
           SDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG
Sbjct: 241 SDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG 300

Query: 301 MGDILALVEEARKGVDMAAAEGLANKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA 360
           MGDILALVEEARKGVDMAAAEGLANKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA
Sbjct: 301 MGDILALVEEARKGVDMAAAEGLANKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA 360

Query: 361 QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR 420
           QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR
Sbjct: 361 QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR 420

Query: 421 MLSQFEQMQSMMKKLKGGGMMKMMRNMKGMLPGGMR 456
           MLSQFEQMQSMMKKLKGGGMMKMMRNMKGMLPGGMR
Sbjct: 421 MLSQFEQMQSMMKKLKGGGMMKMMRNMKGMLPGGMR 456


>gi|300313432|ref|YP_003777524.1| signal recognition particle GTPase
           involved in cell division protein [Herbaspirillum
           seropedicae SmR1]
          Length = 321

 Score =  130 bits (326), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 150/279 (53%), Gaps = 20/279 (7%)

Query: 29  EMLREVRLALLEADVALPAVREFIAKVKEKALGEEVIGSLTPGQALVGVVQRELASLMGA 88
           ++  E+  ALL +D  + A +  + ++K+K   E +  +          V+  L +L+  
Sbjct: 54  DLYEELESALLVSDAGVEATQWLLDELKKKVKAERLTEA--------AQVRTALRTLLIE 105

Query: 89  DLGPEASQLNFATQPPAIILMAGLQGAGKTTTVGKLAKYLRETTKKKVLTVSADVYRPAA 148
            L P    L      P ++++AG+ GAGKTTT+GKLA +L +   + VL  + D +R AA
Sbjct: 106 LLQPLQRPLVLGRDKPLVMMIAGVNGAGKTTTIGKLALHL-QAHGQSVLLAAGDTFRAAA 164

Query: 149 IGQLETVTGQAGADFFPSQATDKPVDIALAALDYAKKHHHEVLIVDTAGRLGIDQAMMDE 208
             QL  V G+       +Q +  P  +A  ++  A+     V++VDTAGRL     +MDE
Sbjct: 165 REQL-AVWGERNNVQVIAQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDE 223

Query: 209 IR--------AVHAAIKPIETLFVVDAMLGQDAINTAKAFSDALPLTGVVLTKLDGDSRG 260
           ++        A+H+A  P E L V+D   GQ+A+   KAF DAL LTG+V+TKLDG ++G
Sbjct: 224 LKKIKRVIGKAMHSA--PHEVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKG 281

Query: 261 GAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRIL 299
           G   ++      P+ F GV E+++ L+AF+ +   + +L
Sbjct: 282 GILAAIAKTRPVPLYFIGVGEQIEDLQAFNATEFVDALL 320


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,259,832
Number of extensions: 52092
Number of successful extensions: 287
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 2
Length of query: 456
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,203,190
Effective search space: 442773920
Effective search space used: 442773920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)