BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0107.p (319 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate A... 650 0.0 gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic pro... 67 1e-12 gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A... 66 4e-12 gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 60 2e-10 gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate A... 59 6e-10 >gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/319 (100%), Positives = 319/319 (100%) Query: 1 MQKKLIALALLASAGFSAASHAADDVIRLGNLKFAHYGAVSYIKEIAPKCGIKVDEKVFA 60 MQKKLIALALLASAGFSAASHAADDVIRLGNLKFAHYGAVSYIKEIAPKCGIKVDEKVFA Sbjct: 1 MQKKLIALALLASAGFSAASHAADDVIRLGNLKFAHYGAVSYIKEIAPKCGIKVDEKVFA 60 Query: 61 KGPDVMQGILAGELDVGTTASEAAISGRANGAPIYVVAGFAKGGARLVAGKDSGIKSVKD 120 KGPDVMQGILAGELDVGTTASEAAISGRANGAPIYVVAGFAKGGARLVAGKDSGIKSVKD Sbjct: 61 KGPDVMQGILAGELDVGTTASEAAISGRANGAPIYVVAGFAKGGARLVAGKDSGIKSVKD 120 Query: 121 LKGKKVGVTRGGIHEVLLDAELGQNGLSAKDVTIVYLAFADLNQALLGKNIDAMMQSEPQ 180 LKGKKVGVTRGGIHEVLLDAELGQNGLSAKDVTIVYLAFADLNQALLGKNIDAMMQSEPQ Sbjct: 121 LKGKKVGVTRGGIHEVLLDAELGQNGLSAKDVTIVYLAFADLNQALLGKNIDAMMQSEPQ 180 Query: 181 SSQAINKGFGVEVMKPYDTPIGEPYRTMVMTEKFYNEKRPLAEKFMRCFLEATKTFIDKP 240 SSQAINKGFGVEVMKPYDTPIGEPYRTMVMTEKFYNEKRPLAEKFMRCFLEATKTFIDKP Sbjct: 181 SSQAINKGFGVEVMKPYDTPIGEPYRTMVMTEKFYNEKRPLAEKFMRCFLEATKTFIDKP 240 Query: 241 EVAEKYVREVIFKNQISKEDFYDAIGNSPYAYDITAEHIQITTDTMAKYGTGKMAKPPVA 300 EVAEKYVREVIFKNQISKEDFYDAIGNSPYAYDITAEHIQITTDTMAKYGTGKMAKPPVA Sbjct: 241 EVAEKYVREVIFKNQISKEDFYDAIGNSPYAYDITAEHIQITTDTMAKYGTGKMAKPPVA 300 Query: 301 KDWVKTDLLEQAKKSMNLK 319 KDWVKTDLLEQAKKSMNLK Sbjct: 301 KDWVKTDLLEQAKKSMNLK 319 >gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 67.4 bits (163), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 15/207 (7%) Query: 49 KCGIKVDEKVFAKGPDVMQGILAGELDVGTTASEAAISGRANGAPIYVVAGFAKGGARLV 108 K G+ V+ F G D+++ I+ G+LD G A++ + GA + VV G G LV Sbjct: 52 KYGLDVELIEFKSGTDLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGYHALV 111 Query: 109 AGKDSGIKSVKDLKGKKVGVTRGG--IHEVLLDAELGQNGLSAKDVTIVYLAFADLNQAL 166 A +DSGI V DLKGK + G VL L G+ A DV ++ ++ Q+L Sbjct: 112 AREDSGINKVADLKGKTLASQAEGSTADTVLKGVVLRDAGIKADDVNVMGVSPQVAVQSL 171 Query: 167 LGKNIDAMMQSEPQSSQAINKGFGVEVMKPYDT--PIGE--PYRTMVM--TEKFYNEKRP 220 +GK +DA EPQ+ A +++ P IGE P+ MV+ + + +KR Sbjct: 172 VGKRVDAAFLFEPQARIA-------QLIAPVKQVYEIGEVWPFPCMVVITSGETLKKKRE 224 Query: 221 LAEKFMRCFLEATKTFIDKPEVAEKYV 247 K + +A KP A K + Sbjct: 225 AVWKSLDAQRDAITLLQKKPAEASKLI 251 >gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 65.9 bits (159), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 13/189 (6%) Query: 2 QKKLIALALLASA---GFSAASHAADDVIRLGNLKFAHY----GAVSYIKEIAPKCGIKV 54 +++L+ L A A G AAD V+R+G KF G+ + + P+ G V Sbjct: 9 KRRLLLQGLAAGALASGTPLVRAAADKVLRIGYQKFNTLNILKGSGKLEQALQPQ-GWSV 67 Query: 55 DEKVFAKGPDVMQGILAGELDVGTTASEAAISGRANGA-PIYVVA--GFAKGGARLVAGK 111 FA GP + + + A +D+G A ++ A+G +Y+ A + KG VA + Sbjct: 68 KWFEFAAGPQLTEALNANAIDLGHAADTPSVFANASGVNAVYLGAEQPYPKGIGIFVA-Q 126 Query: 112 DSGIKSVKDLKGKKVGVTRGGIHEVLLDAELGQNGLSAKDVTIVYLA-FADLNQALLGKN 170 +S I+SV DLKGKKV RG + LL L + GLS +D+ VY+ AD+ A N Sbjct: 127 ESPIRSVADLKGKKVATGRGWNVQFLLLKALEEVGLSYRDIEPVYVTNAADVRAAFQSGN 186 Query: 171 IDAMMQSEP 179 +DA +P Sbjct: 187 VDAATLWDP 195 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 12/183 (6%) Query: 44 KEIAPKCGIKVDEKVFAKGPDVMQGILAGELDVGTTASEAAISGRANGAP-IYVVAGFAK 102 K + P G++V FA GP +++ + G +D G + +A GA +Y Sbjct: 67 KRLQP-LGVEVKWAEFAAGPQLLEALNVGSVDFGYVGEAPPVFAQAAGADFVYTAYEIPT 125 Query: 103 GGAR-LVAGKDSGIKSVKDLKGKKVGVTRGGIHEVLLDAELGQNGLSAKDVTIVYLAFAD 161 A L+ K+S IKSV +LKGKK+ +G L+ A L + GL D+ VYLA AD Sbjct: 126 PDAEGLLVQKNSPIKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLAPAD 185 Query: 162 LNQALLGKNIDAMMQSEPQSSQAINKGFGVEVMKPYDTPIGEPYRTMVMTEKFYNEKRPL 221 A +DA +P + A K G + T +G V +F+ RP Sbjct: 186 ARAAFERGAVDAWAIWDPFQA-AAEKQVGARRLA---TGVG-----AVNHHQFFLSARPF 236 Query: 222 AEK 224 A K Sbjct: 237 AAK 239 >gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 15/185 (8%) Query: 7 ALALLASAGFSAASHAAD--DVIRLGNLKFAHYGAVS-------YIKEIAPKCGIKVDEK 57 AL + A G S AA VIRL +A+Y S +++E G +V + Sbjct: 13 ALGVTALGGIPLLSSAAQPPKVIRL---DYAYYSPPSLVLRKFGWLEEDLKAQGTEV-KW 68 Query: 58 VFAKGPD-VMQGILAGELDVGTTASEAAISGRANGAPIYVVAGFAKG-GARLVAGKDSGI 115 V ++G + ++ + + +D G+TA AA+ RANG P+ V +++ L GK+S + Sbjct: 69 VLSQGSNRALEYLNSDSVDFGSTAGLAALLARANGNPVKAVYIYSRPEWTALAVGKESPV 128 Query: 116 KSVKDLKGKKVGVTRGGIHEVLLDAELGQNGLSAKDVTIVYLAFADLNQALLGKNIDAMM 175 KS+ +LKGKK+ T+G + L L +NGL DV IV+L AD AL + A Sbjct: 129 KSINELKGKKIAATKGTDPYLFLLRALHENGLKKSDVEIVHLQHADGRAALEQGRVAAWA 188 Query: 176 QSEPQ 180 +P Sbjct: 189 GLDPH 193 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 885,889 Number of extensions: 36402 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 9 Length of query: 319 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 234 Effective length of database: 1,217,395 Effective search space: 284870430 Effective search space used: 284870430 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)