BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0100.p
         (388 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside re...   813   0.0  

>gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside
           reductase small subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 388

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/388 (100%), Positives = 388/388 (100%)

Query: 1   MLSWDDEAKQPAQAPRTPNLQPQLQPAFGQSNAALNPALMAGNSEQVDTTRRVNAADKRI 60
           MLSWDDEAKQPAQAPRTPNLQPQLQPAFGQSNAALNPALMAGNSEQVDTTRRVNAADKRI
Sbjct: 1   MLSWDDEAKQPAQAPRTPNLQPQLQPAFGQSNAALNPALMAGNSEQVDTTRRVNAADKRI 60

Query: 61  INGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLTEDERRLVKR 120
           INGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLTEDERRLVKR
Sbjct: 61  INGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLTEDERRLVKR 120

Query: 121 NLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEAE 180
           NLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEAE
Sbjct: 121 NLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEAE 180

Query: 181 IFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFACIMEGLFFYVG 240
           IFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFACIMEGLFFYVG
Sbjct: 181 IFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFACIMEGLFFYVG 240

Query: 241 FTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTPEFREEIKSL 300
           FTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTPEFREEIKSL
Sbjct: 241 FTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTPEFREEIKSL 300

Query: 301 FLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRAQQIGLDPLFAQEENPFPWMS 360
           FLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRAQQIGLDPLFAQEENPFPWMS
Sbjct: 301 FLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRAQQIGLDPLFAQEENPFPWMS 360

Query: 361 EMIDLKKERNFFETRVIEYQTGGALSWE 388
           EMIDLKKERNFFETRVIEYQTGGALSWE
Sbjct: 361 EMIDLKKERNFFETRVIEYQTGGALSWE 388


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,191,143
Number of extensions: 47180
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,207,925
Effective search space: 363585425
Effective search space used: 363585425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)