BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0097.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309725|ref|YP_003773817.1| bacterioferritin comigratory pr...   399   e-112
gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory ox...    54   9e-09

>gi|300309725|ref|YP_003773817.1| bacterioferritin comigratory
           protein [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  399 bits (1024), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MPHRSSLVLPSLSTLRGLAVGAALLGAVLASPAAPAALKPGEKAPEFSAPASLGGQVSTF 60
           MPHRSSLVLPSLSTLRGLAVGAALLGAVLASPAAPAALKPGEKAPEFSAPASLGGQVSTF
Sbjct: 1   MPHRSSLVLPSLSTLRGLAVGAALLGAVLASPAAPAALKPGEKAPEFSAPASLGGQVSTF 60

Query: 61  TLSEALKKGPVVLYFYPAAFTSGCTIEAHLFAEAVDRYKALGATVIGVSGDNIETLNKFS 120
           TLSEALKKGPVVLYFYPAAFTSGCTIEAHLFAEAVDRYKALGATVIGVSGDNIETLNKFS
Sbjct: 61  TLSEALKKGPVVLYFYPAAFTSGCTIEAHLFAEAVDRYKALGATVIGVSGDNIETLNKFS 120

Query: 121 VSECRSKFAVAADVDKKIMKAYDAQFLKVTGYASRTSYVITPDHAILYEYTDMNPEKHVE 180
           VSECRSKFAVAADVDKKIMKAYDAQFLKVTGYASRTSYVITPDHAILYEYTDMNPEKHVE
Sbjct: 121 VSECRSKFAVAADVDKKIMKAYDAQFLKVTGYASRTSYVITPDHAILYEYTDMNPEKHVE 180

Query: 181 NTMQALEKWSAAQKR 195
           NTMQALEKWSAAQKR
Sbjct: 181 NTMQALEKWSAAQKR 195


>gi|300311399|ref|YP_003775491.1| bacterioferritin comigratory
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score = 53.9 bits (128), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 12/149 (8%)

Query: 45  PEFSAPASLGGQVSTFTLSEALKKGPVVLYFYPAAFTSGCTIEAHLFAEAVDRYKALGAT 104
           P+FSA  + G    TF L++   K  +VLYFYP   T GCT E   F +   +++A    
Sbjct: 13  PDFSAAMTSG---KTFQLADYQGKN-LVLYFYPKDNTPGCTTEGMQFRDLHAQFQAANTE 68

Query: 105 VIGVSGDNIETLNKFSVSECRSKFAVAADVDKKIMKAYDAQFLK------VTGYASRTSY 158
           + GVS D++++   F  ++    F + +D D+ +   +D   +K      V G   R+++
Sbjct: 69  IFGVSRDSLKSHENFK-AKLGMPFELISDPDETLCTMFDVMKMKNMYGKQVRG-VERSTF 126

Query: 159 VITPDHAILYEYTDMNPEKHVENTMQALE 187
           VI     ++ E+  +    HV+  +  ++
Sbjct: 127 VIDGAGKVVKEWRGVKVPAHVDEVLAFIQ 155


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 501,547
Number of extensions: 16268
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)