BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0090.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309732|ref|YP_003773824.1| thioredoxin-related transmembra...   353   4e-99
gi|300313955|ref|YP_003778047.1| thioredoxin protein [Herbaspiri...    59   2e-10

>gi|300309732|ref|YP_003773824.1| thioredoxin-related transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  353 bits (907), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 172/173 (99%), Positives = 173/173 (100%)

Query: 2   MKKLRNVILLAVVAVVCVGIGLYASHRAHPADSAETQALNRLLAQSLPDATGQMQSLAQY 61
           MKKLRNVILLAVVAVVCVGIGLYASHRAHPA+SAETQALNRLLAQSLPDATGQMQSLAQY
Sbjct: 1   MKKLRNVILLAVVAVVCVGIGLYASHRAHPAESAETQALNRLLAQSLPDATGQMQSLAQY 60

Query: 62  RGKPLIVNFWATWCGPCVEEMPELTALQQEIAPVQILGIGVDSQENIGKFAQKYQIRYPL 121
           RGKPLIVNFWATWCGPCVEEMPELTALQQEIAPVQILGIGVDSQENIGKFAQKYQIRYPL
Sbjct: 61  RGKPLIVNFWATWCGPCVEEMPELTALQQEIAPVQILGIGVDSQENIGKFAQKYQIRYPL 120

Query: 122 FVAGTGATDLLRQFGNQAGGLPFTALVGKDGNVKKIYLGRLKFDELRQDLSQL 174
           FVAGTGATDLLRQFGNQAGGLPFTALVGKDGNVKKIYLGRLKFDELRQDLSQL
Sbjct: 121 FVAGTGATDLLRQFGNQAGGLPFTALVGKDGNVKKIYLGRLKFDELRQDLSQL 173


>gi|300313955|ref|YP_003778047.1| thioredoxin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 175

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 49  PDAT-----GQMQSLAQYRGKPLIVNFWATWCGPCVEEMPELTALQQEIAPVQILGIGVD 103
           PD T     GQ  +L   RGK ++VNFWAT C  CV EMP++     +     +  + V 
Sbjct: 40  PDVTFTKLDGQQVNLKDLRGKVVMVNFWATSCTTCVGEMPQMIDTYNKFKDRGLDFVAVA 99

Query: 104 SQENIGKFAQKY--QIRYPLFVAGTGATDLLRQFGNQAGGLPFTALVGKDGNVKKIYLGR 161
              +   +   Y    + P  VA      L + FG+     P T ++ K GN+ K Y+G 
Sbjct: 100 MSYDPPNYVLNYTETRKLPFKVALDPQDTLAKAFGD-VKLTPTTFVIDKQGNIIKRYVGE 158

Query: 162 LKFDELRQDLSQ 173
            +F EL Q L +
Sbjct: 159 PQFAELHQLLEK 170


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 506,773
Number of extensions: 21258
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)