BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0087.p (567 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 1121 0.0 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 532 e-152 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 512 e-146 gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I p... 496 e-141 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 490 e-139 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 1121 bits (2900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 565/567 (99%), Positives = 565/567 (99%) Query: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 241 ARSADETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 ARS DETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL Sbjct: 241 ARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 Query: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV Sbjct: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 Query: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID Sbjct: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 Query: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE Sbjct: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 Query: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGAARQQAPEVAVVATAAPAYTPRR 540 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGAARQQ PEVAVVATAAPAYTPRR Sbjct: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGAARQQVPEVAVVATAAPAYTPRR 540 Query: 541 PAVAGATSTATPALAVAQGPDEQWETF 567 PAVAGATSTATPALAVAQGPDEQWETF Sbjct: 541 PAVAGATSTATPALAVAQGPDEQWETF 567 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 532 bits (1370), Expect = e-152, Method: Compositional matrix adjust. Identities = 310/547 (56%), Positives = 394/547 (72%), Gaps = 7/547 (1%) Query: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 M WFY+ RI+ KL+ F V+ + LG+FSI QL +VN A+TE++TNWLPSIR+L ++ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 +A+SR+R+ + Q L D K+ V M + L A+ +Y QISEP EKA++P V Sbjct: 61 LAMSRLRSFELQHILAK-DAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEV 119 Query: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 I F++ H +A R GK +EA+ L G + + Y + L +DKLA VN G+ S Sbjct: 120 EKLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISN 179 Query: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 + A+ Y QA++W++ + + + LA++++R+IA PL A A +A GDLT I Sbjct: 180 KQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIE 239 Query: 241 ARSADETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 DETGQL AL +MN SL IV QVR GT I TAS +I+SGNLDLSSRTEEQASSL Sbjct: 240 PAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSL 299 Query: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 EETASAMEELTSTV+QNA+NARQANQLA+SAS +A +GG VV+QV++TMGSI+ASS+KI Sbjct: 300 EETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIA 359 Query: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 DII VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LI+ Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIE 419 Query: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 SV QV +GS LV++AG+T+SEVV SV+RVTD++ EIS+AS EQ++GIEQVN AI QMDE Sbjct: 420 GSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDE 479 Query: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL---PG--AARQQAPEVAVVATAAPA 535 VTQQNAALVEEAA+A+QSL QA+ L++ VG F+L P A+R +V TAA Sbjct: 480 VTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVRAASVARTAAVR 539 Query: 536 YTP-RRP 541 + P RP Sbjct: 540 HAPATRP 546 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 512 bits (1319), Expect = e-146, Method: Compositional matrix adjust. Identities = 290/516 (56%), Positives = 387/516 (75%), Gaps = 3/516 (0%) Query: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 M WF N +IA KL+++FA V++LT LG+F+I +L VNQA+T++ATNWLP+I++ ++ Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 +L R+R ++ Q+ ++ A+ + ++ L+ LA+ R Y QISE EK L+ Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSR-LDILAKQRAAYEAQISEAEEKVLYEKF 119 Query: 121 NARIDKFIALHGDTLAAVRA-GKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQS 179 + ++ + + LA + A GK +EA+ L G + + + S++ ++D++ +VN GS +S Sbjct: 120 SKSFATYLEIDKE-LARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRS 178 Query: 180 TRSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADI 239 AE Y A +W++ +L ++ L LA+ +AR ++ PL A A +A GDLT DI Sbjct: 179 DDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDI 238 Query: 240 TARSADETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASS 299 A S DETG L +L AMN SL++IV +VR+GTD I TAS +I++GNLDLSSRTEEQA S Sbjct: 239 RATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGS 298 Query: 300 LEETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKI 359 LEETASAMEELT+TV+QNA+NARQANQLA SAS IA +GG VV QV++TM I SS +I Sbjct: 299 LEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRI 358 Query: 360 VDIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLI 419 DIISVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LI Sbjct: 359 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLI 418 Query: 420 DNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMD 479 D+SV++VG GS LV++AG T+SEVV+SV+RVTDV++EISAAS EQ+ GIE++N+AITQMD Sbjct: 419 DDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMD 478 Query: 480 EVTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL 515 EVTQQNAALVEEAA+A+QSL QA RLS++V VF+L Sbjct: 479 EVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300313049|ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 496 bits (1277), Expect = e-141, Method: Compositional matrix adjust. Identities = 290/515 (56%), Positives = 384/515 (74%) Query: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 M WF N +IA KL LAF VL+L LGIFSI QL KV A++E++T+W+P+ + L D+K Sbjct: 1 MGWFKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLK 60 Query: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 + R+R ++QLA+YDGD + + ++ L L + K Y + E+ L+ V Sbjct: 61 LYFVRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDYEASLDNVPERELYTKV 120 Query: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 +I +F+A H +AA A + + L LG + + Y +L DL+KL ++N DG +T Sbjct: 121 AGQIGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNAAT 180 Query: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 A+ T+ +++V V+ +L AL G+ LAL++AR+IA PL+ A + A +A GDL A I Sbjct: 181 ADADDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQ 240 Query: 241 ARSADETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 +S DETGQL AL MN LR++V QVRSGTD+IATAS +I++GNLDLS RTE+QA++L Sbjct: 241 VQSKDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQATAL 300 Query: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 EETASA+EELTSTV+QN +NARQANQLA++AS +A GG VV QV+ETM +I+ +S +IV Sbjct: 301 EETASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEASNRIV 360 Query: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 +IISVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LID Sbjct: 361 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 420 Query: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 +SV +VG G+ LV++AG T+SEVV SV+RVTDV+SEISAAS EQ+ GI+++N+A+TQMDE Sbjct: 421 DSVSKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQMDE 480 Query: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL 515 VTQQNAALVEEAA+A+QS+ QA RL+ V VF+L Sbjct: 481 VTQQNAALVEEAAAAAQSMQEQASRLAATVSVFKL 515 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 490 bits (1261), Expect = e-139, Method: Compositional matrix adjust. Identities = 298/575 (51%), Positives = 390/575 (67%), Gaps = 12/575 (2%) Query: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 MNWFYN +IA KL AF VL+ GLG FS ++L VN+++T++A NWLPSI +L+ M Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 +AL+R R+ Q L D+++ A +K + L + +Y +SEP EK L+P + Sbjct: 61 LALARSRSFDMQ-QLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEI 119 Query: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 I + H A + A L+ + Y L + +L++VN G+ S Sbjct: 120 ERNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSD 179 Query: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 A+ Y QA + ++A++ ++ +AL+ +IAR++A PL +A + A +AAGDLTADI Sbjct: 180 ADADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIP 239 Query: 241 ARSADETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 DETGQL AL MN +L IV +VR GTD I TAS +I++GN+DLSSRTE+QA +L Sbjct: 240 TAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGAL 299 Query: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 EETASAMEELTSTVRQN++NARQANQLA++AS +A+ GG VV +V+ TM +I+ SS+KIV Sbjct: 300 EETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIV 359 Query: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 DII VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AA EIK LID Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALID 419 Query: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 +SV +V GS LV +AG T++EVV+SV+RV+D+++EI+AA EQTQGIEQ+N A+ QMDE Sbjct: 420 DSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDE 479 Query: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGAARQQAPEVA--VVATAAPA--Y 536 TQQNAALVE+AA+A+++L QA RLSE V VFRL Q P V ATA P Sbjct: 480 NTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDA---QHVPVVVSRAAATAQPERDI 536 Query: 537 TPRRPAVAGATST--ATPALAVAQGPDEQ--WETF 567 TP RPA+A + S A PA + EQ WE F Sbjct: 537 TPARPALAQSRSKVMARPAHSNTSASAEQGDWEQF 571 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,185,418 Number of extensions: 37342 Number of successful extensions: 543 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 271 Number of HSP's successfully gapped: 71 Length of query: 567 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 477 Effective length of database: 1,193,720 Effective search space: 569404440 Effective search space used: 569404440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)