BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0077.p
         (156 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309745|ref|YP_003773837.1| hypothetical protein Hsero_0404...   312   9e-87
gi|300312098|ref|YP_003776190.1| transmembrane protein [Herbaspi...    54   7e-09

>gi|300309745|ref|YP_003773837.1| hypothetical protein Hsero_0404
           [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  312 bits (799), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   MSVRHHYASLAIVSLSFAGLLIGCASPQQQPYGAVPQSQNYDRVASYTGTGVVEAIEVTH 60
           MSVRHHYASLAIVSLSFAGLLIGCASPQQQPYGAVPQSQNYDRVASYTGTGVVEAIEVTH
Sbjct: 1   MSVRHHYASLAIVSLSFAGLLIGCASPQQQPYGAVPQSQNYDRVASYTGTGVVEAIEVTH 60

Query: 61  KESNGVAGTVVGGVAGGLVGNAIGGGTGRVLATVAGAAGGAYAGNKIQRNNSEGRQVYNI 120
           KESNGVAGTVVGGVAGGLVGNAIGGGTGRVLATVAGAAGGAYAGNKIQRNNSEGRQVYNI
Sbjct: 61  KESNGVAGTVVGGVAGGLVGNAIGGGTGRVLATVAGAAGGAYAGNKIQRNNSEGRQVYNI 120

Query: 121 RVRMDDGSMQTFAQEDNTDFRVGDRVRLDNGRISRY 156
           RVRMDDGSMQTFAQEDNTDFRVGDRVRLDNGRISRY
Sbjct: 121 RVRMDDGSMQTFAQEDNTDFRVGDRVRLDNGRISRY 156


>gi|300312098|ref|YP_003776190.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 53.5 bits (127), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 73/130 (56%), Gaps = 6/130 (4%)

Query: 26  SPQQQPYGAVPQSQNYDRVASYTGTG--VVEAIEVTHKESNGVAGTVVGGVAGGLVGNAI 83
           +PQQ  Y +  QS    R A+   +   VV    V H       G   G V GGL+GN I
Sbjct: 74  APQQAAYPS--QSAEAPRAAAVCSSCGEVVAVRAVQHTPQTSGVGIAGGAVVGGLLGNQI 131

Query: 84  GGGTGRVLATVAGAAGGAYAGNKIQRNNSEGRQVYNIRVRMDDGSMQTFAQEDNTDFRVG 143
           GGG GR LAT+AGA GG YAGN +++N       Y + VRMD+G  ++F Q    ++RVG
Sbjct: 132 GGGNGRTLATIAGAVGGGYAGNMVEKN-VRTTTTYVVDVRMDNGKSRSFPQ-SGANWRVG 189

Query: 144 DRVRLDNGRI 153
           D+VR+ NG +
Sbjct: 190 DQVRVVNGHL 199


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 349,072
Number of extensions: 10470
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 2
Length of query: 156
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,250,540
Effective search space: 97542120
Effective search space used: 97542120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)