BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0075.p
         (449 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309747|ref|YP_003773839.1| membrane metalloendopeptidase [...   925   0.0  
gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptid...    65   2e-11

>gi|300309747|ref|YP_003773839.1| membrane metalloendopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/449 (100%), Positives = 449/449 (100%)

Query: 1   VLQSCHHKVAASSPKTRIIGASALFLAAFTIGAAGFAPAEPDMKDAPVNPISKELALPDL 60
           VLQSCHHKVAASSPKTRIIGASALFLAAFTIGAAGFAPAEPDMKDAPVNPISKELALPDL
Sbjct: 58  VLQSCHHKVAASSPKTRIIGASALFLAAFTIGAAGFAPAEPDMKDAPVNPISKELALPDL 117

Query: 61  QHQISALEEQSQYYVNEEKVRSGDTLATLLNRLGVDDDEAMAFIKSDTLARSVMQLRAGK 120
           QHQISALEEQSQYYVNEEKVRSGDTLATLLNRLGVDDDEAMAFIKSDTLARSVMQLRAGK
Sbjct: 118 QHQISALEEQSQYYVNEEKVRSGDTLATLLNRLGVDDDEAMAFIKSDTLARSVMQLRAGK 177

Query: 121 RVVAQTDDNGELVKLSATLDDGSDAPKNLVISRHDGKLSAEAQPAVLERRVEMRSGVIFS 180
           RVVAQTDDNGELVKLSATLDDGSDAPKNLVISRHDGKLSAEAQPAVLERRVEMRSGVIFS
Sbjct: 178 RVVAQTDDNGELVKLSATLDDGSDAPKNLVISRHDGKLSAEAQPAVLERRVEMRSGVIFS 237

Query: 181 SLFAATDAVQIPDAVAMQLVDMFATNINFASDLRRGDRFNVVYETFWQNGDLVRTGRVLA 240
           SLFAATDAVQIPDAVAMQLVDMFATNINFASDLRRGDRFNVVYETFWQNGDLVRTGRVLA
Sbjct: 238 SLFAATDAVQIPDAVAMQLVDMFATNINFASDLRRGDRFNVVYETFWQNGDLVRTGRVLA 297

Query: 241 GEFDNAGNRYQAVWFSDPASKTGGGGYYAFDGKSLKKAFLKSPLAFTRISSGFSMRLHPI 300
           GEFDNAGNRYQAVWFSDPASKTGGGGYYAFDGKSLKKAFLKSPLAFTRISSGFSMRLHPI
Sbjct: 298 GEFDNAGNRYQAVWFSDPASKTGGGGYYAFDGKSLKKAFLKSPLAFTRISSGFSMRLHPI 357

Query: 301 LGKWKQHTGVDFAAPTGTPIHAAADGVVDFVGKQNGYGNIVVIKHWSGYSTAYGHMSRFA 360
           LGKWKQHTGVDFAAPTGTPIHAAADGVVDFVGKQNGYGNIVVIKHWSGYSTAYGHMSRFA
Sbjct: 358 LGKWKQHTGVDFAAPTGTPIHAAADGVVDFVGKQNGYGNIVVIKHWSGYSTAYGHMSRFA 417

Query: 361 PDIKKGMKVSQNDVIGFVGMTGWATGPHLHYEFRVNNQPRNPLSVDVPNNQALTGPQLQR 420
           PDIKKGMKVSQNDVIGFVGMTGWATGPHLHYEFRVNNQPRNPLSVDVPNNQALTGPQLQR
Sbjct: 418 PDIKKGMKVSQNDVIGFVGMTGWATGPHLHYEFRVNNQPRNPLSVDVPNNQALTGPQLQR 477

Query: 421 FRTVAADMQHRMAMLRVPGAPDVKLASVK 449
           FRTVAADMQHRMAMLRVPGAPDVKLASVK
Sbjct: 478 FRTVAADMQHRMAMLRVPGAPDVKLASVK 506


>gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 66/133 (49%), Gaps = 4/133 (3%)

Query: 272 GKSLKKAFLKS--PLAFTRISSGFSMRLHPILGKWKQHTGVDFAAPTGTPIHAAADGVVD 329
           G  +K   L +  P+     SS F  RL P  G    H G+DF AP GT I AAA GVV 
Sbjct: 171 GDKIKSRLLPTNQPVNVAYNSSSFGWRLDPFTGHNAFHEGLDFPAPVGTRIVAAAAGVVI 230

Query: 330 FVGKQNGYGNIVVIKHWSGYSTAYGHMSRFAPDIKKGMKVSQNDVIGFVGMTGWATGPHL 389
                  +GN++ I H +   T Y H SR    +K G  V +   +  VG TG +TG HL
Sbjct: 231 ASEYHYQFGNMLEIDHGNNIITRYAHASRLF--VKVGDIVKRGQHVADVGSTGRSTGAHL 288

Query: 390 HYEFRVNNQPRNP 402
           H+E R+    ++P
Sbjct: 289 HFEVRIRGIAQDP 301


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,467,673
Number of extensions: 64409
Number of successful extensions: 191
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 2
Length of query: 449
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 361
Effective length of database: 1,203,190
Effective search space: 434351590
Effective search space used: 434351590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)