BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0069.p
         (440 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309753|ref|YP_003773845.1| HipA domain-containing protein ...   891   0.0  
gi|300313385|ref|YP_003777477.1| HipA domain-containing protein ...    77   3e-15

>gi|300309753|ref|YP_003773845.1| HipA domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/440 (99%), Positives = 438/440 (99%)

Query: 1   MNGSFVGTWALTAQGDSLQYDARWVVSASGRPLSLSLPFRPGNPPHRGDLVRHYFENLLP 60
           MNGSFVGTWALTAQGDSLQYDARWVVSASGRPLSLSLPFRPGNPPHRGDLVRHYFENLLP
Sbjct: 16  MNGSFVGTWALTAQGDSLQYDARWVVSASGRPLSLSLPFRPGNPPHRGDLVRHYFENLLP 75

Query: 61  DSKAIRERLARRYQAADTDAFALLGEAGRDCVGALQILPLGATPELSWTIDARPLREREV 120
           DSKAIRERLARRYQAADTDAFALLGEAGRDCVGALQILPLGATPELSWTIDARPLREREV
Sbjct: 76  DSKAIRERLARRYQAADTDAFALLGEAGRDCVGALQILPLGATPELSWTIDARPLREREV 135

Query: 121 AELLRQTMEPTPLALTQGEELRLSIAGAQEKTALLRYLDQWCLPHGATPTTHILKLPMGL 180
           AELLRQTMEPTPLALTQGEELRLSIAGAQEKTALLRYLDQWCLPHGATPTTHILKLPMGL
Sbjct: 136 AELLRQTMEPTPLALTQGEELRLSIAGAQEKTALLRYLDQWCLPHGATPTTHILKLPMGL 195

Query: 181 VGGLQLDLRHSVENEWLCSRILAAYGMPVAACDILCFEDQKVLAVERFDRRWSRDPASGQ 240
           VGGLQLDLRHSVENEWLCSRILAAYGMPVAACDI CFEDQKVLAVERFDRRWSRDPASGQ
Sbjct: 196 VGGLQLDLRHSVENEWLCSRILAAYGMPVAACDIFCFEDQKVLAVERFDRRWSRDPASGQ 255

Query: 241 AMLLRLPQEDMCQATGISPWLKYEADGGPGMKEIMALLGGAIDPVAARRHFFKAQLLFWM 300
            MLLRLPQEDMCQATGISPWLKYEADGGPGMKEIMALLGGAIDPVAARRHFFKAQLLFWM
Sbjct: 256 TMLLRLPQEDMCQATGISPWLKYEADGGPGMKEIMALLGGAIDPVAARRHFFKAQLLFWM 315

Query: 301 LWATDGHAKNFSLFLKAGGRYEPTPLYDVLSVFPLIGEGPGKLSPHRAAMAMAVRAKNAH 360
           LWATDGHAKNFSLFLKAGGRYEPTPLYDVLSVFPLIGEGPGKLSPHRAAMAMAVRAKNAH
Sbjct: 316 LWATDGHAKNFSLFLKAGGRYEPTPLYDVLSVFPLIGEGPGKLSPHRAAMAMAVRAKNAH 375

Query: 361 RKMKDILPRHWMALGSHFGIVAENGDGPLAILEELAEQTEQVIAKVQADLPPGFPSELAA 420
           RKMKDILPRHWMALGSHFGIVAENGDGPLAILEELAEQTEQVIAKVQADLPPGFPSELAA
Sbjct: 376 RKMKDILPRHWMALGSHFGIVAENGDGPLAILEELAEQTEQVIAKVQADLPPGFPSELAA 435

Query: 421 SILDGLRRSASSLLSFVQTA 440
           SILDGLRRSASSLLSFVQTA
Sbjct: 436 SILDGLRRSASSLLSFVQTA 455


>gi|300313385|ref|YP_003777477.1| HipA domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 439

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 132/331 (39%), Gaps = 27/331 (8%)

Query: 17  SLQYDARWVVSASGRPLSLSLPFRPGNPPHRGDLVRHYFENLLPDSKAIRERLARRYQAA 76
           +  Y A W +S    PLS       G    +     ++  NL P+  A R  + +  +  
Sbjct: 29  NFYYYAHWQLSTETFPLSPHFALSQGR--FKSSATANFMMNLFPEGDA-RMAIMKHSRLN 85

Query: 77  DTDAFALLGEAGRDCVGALQILPLGATPEL--SWTIDARPLREREVAELLRQTMEPTPLA 134
             + F++    G +  GA   L    T  L  S     R + + E++E +       P A
Sbjct: 86  ADNVFSMAYLFGAEPAGAASFLFHSGTSALPSSQAPYLREIDDDELSERIHARHRGVPFA 145

Query: 135 LTQGEELRLSIAGAQEKTALLRYLDQWCLPHGATPTTHILK-LPMGLVGGLQLDLRHSVE 193
              G     S+AG Q+K  ++ + ++  L  G+  +THILK  P G          H V 
Sbjct: 146 QWHGA-WHQSLAGVQDKLQVIFHDERLFLAGGSLTSTHILKPEPQG------ERTPHLVA 198

Query: 194 NEWLCSRILAAYGMPVAACDILCFEDQKVLAVERFDRRWSRDPASGQ-AMLLRLPQEDMC 252
           NE  C  + AA G+ V    I     + VL ++RFDR ++      Q   + R    D C
Sbjct: 199 NEHFCMSLAAAVGLSVPHVKIHR-APEAVLLIDRFDRTYAPGTDVLQPGRVERTHIIDGC 257

Query: 253 QATGISPWLKYEADGGP-----------GMKEIMALLGGAIDPVAARRHFFKAQLLFWML 301
           QA  +  W KYE  GG              K +  L     D  AA+    +  L   ++
Sbjct: 258 QALELPSWYKYECLGGHQNRSPERRYGIDFKRLFGLAPHFEDASAAKLLIVRWALFNLLI 317

Query: 302 WATDGHAKNFSLFLKAGGRYEPTPLYDVLSV 332
             +D H KN S    A G   P P YD++SV
Sbjct: 318 GNSDAHGKNISFRQTANG-IMPAPFYDLVSV 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,569,233
Number of extensions: 72084
Number of successful extensions: 221
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 2
Length of query: 440
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,203,190
Effective search space: 423522880
Effective search space used: 423522880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)