BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0065.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309757|ref|YP_003773849.1| hypothetical protein Hsero_0416...   690   0.0  
gi|300310694|ref|YP_003774786.1| MerR-family transcription regul...   152   4e-38

>gi|300309757|ref|YP_003773849.1| hypothetical protein Hsero_0416
           [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/347 (100%), Positives = 347/347 (100%)

Query: 1   MTEPIPTAPTSSTSSPEEKGPAPLRRTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQ 60
           MTEPIPTAPTSSTSSPEEKGPAPLRRTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQ
Sbjct: 1   MTEPIPTAPTSSTSSPEEKGPAPLRRTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQ 60

Query: 61  RLYSEADVRRLALIRQLTELGHAIGSLAGLDMEQLQQVAATHAELHAGRPTPPEAVQGRW 120
           RLYSEADVRRLALIRQLTELGHAIGSLAGLDMEQLQQVAATHAELHAGRPTPPEAVQGRW
Sbjct: 61  RLYSEADVRRLALIRQLTELGHAIGSLAGLDMEQLQQVAATHAELHAGRPTPPEAVQGRW 120

Query: 121 RLAVIGSTLAQRLDKPGLLQRLGRPLQLLGPFENIEQAAMALKREEVDALLLHEPQLHAG 180
           RLAVIGSTLAQRLDKPGLLQRLGRPLQLLGPFENIEQAAMALKREEVDALLLHEPQLHAG
Sbjct: 121 RLAVIGSTLAQRLDKPGLLQRLGRPLQLLGPFENIEQAAMALKREEVDALLLHEPQLHAG 180

Query: 181 WLGALESSAPALSGLPMAVLYGFASEAVCETLAAVGISLLRAPQPDVVILQWLRGLVALS 240
           WLGALESSAPALSGLPMAVLYGFASEAVCETLAAVGISLLRAPQPDVVILQWLRGLVALS
Sbjct: 181 WLGALESSAPALSGLPMAVLYGFASEAVCETLAAVGISLLRAPQPDVVILQWLRGLVALS 240

Query: 241 SPAREEMAAGTVLPPRRWSDNQLIAFANQSTTVACECPRHVAELLMQLSQFERYSAQCAN 300
           SPAREEMAAGTVLPPRRWSDNQLIAFANQSTTVACECPRHVAELLMQLSQFERYSAQCAN
Sbjct: 241 SPAREEMAAGTVLPPRRWSDNQLIAFANQSTTVACECPRHVAELLMQLSQFERYSAQCAN 300

Query: 301 RNVADAQLHQYLQQLTSESRQRFEMALTRIAEHEGLIAEGATSAELG 347
           RNVADAQLHQYLQQLTSESRQRFEMALTRIAEHEGLIAEGATSAELG
Sbjct: 301 RNVADAQLHQYLQQLTSESRQRFEMALTRIAEHEGLIAEGATSAELG 347


>gi|300310694|ref|YP_003774786.1| MerR-family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score =  152 bits (384), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 164/328 (50%), Gaps = 7/328 (2%)

Query: 10  TSSTSSPEEKGPAPLRRTGAVARMLRMPVATLRVWERRYALTQGQLSPSGQRLYSEADVR 69
           ++S + P+E    PL R GAVAR L M V TLR WE RY LT    S  GQRLYS+ DV+
Sbjct: 3   SNSPTDPDELNELPLLRPGAVARQLGMSVETLRAWENRYGLTSSHHSGGGQRLYSQEDVQ 62

Query: 70  RLALIRQLTELGHAIGSLAGLDMEQLQQVAATHAELHAGRPTPPEAVQGRWRLAVIGSTL 129
           RLA I++L + GH IG LA L +E L+ +  +     A  P     + G  RL + G  +
Sbjct: 63  RLAHIKRLVDEGHRIGQLAALPLEALKSLDPSP---EAAGPAGQTTLAG-LRLVLAGPWI 118

Query: 130 AQRLDKPGLLQRLGRPLQLLGPFENIEQAAMALKREEVDALLLHEPQLHAGWLGALESSA 189
           +       L Q+       +   E + Q+++ L    V  LL+    L  G  G +ES  
Sbjct: 119 SSTGCIEALRQQQASVSAAVQDLEELRQSSLGLD-TGVALLLVESAVLDPGLGGRMESVR 177

Query: 190 PALSGLPMAVLYGFASEAVCETLAAVGISLLRAPQPDVVILQWLRGLV-ALSSPAREEMA 248
            + +   + +LY F S  +   L   G  L+R P  D +   WL  LV  L  P  E   
Sbjct: 178 RSFASARVVILYRFGSPEMVARLTQAGHQLVRKPM-DGIDPAWLCELVRRLDLPPGEVQM 236

Query: 249 AGTVLPPRRWSDNQLIAFANQSTTVACECPRHVAELLMQLSQFERYSAQCANRNVADAQL 308
               +P  R+S+ +L   +  ST + CECPRH+AELL  L  FERYS QC + +  +A L
Sbjct: 237 DSPDVPAPRFSEAELAQVSQASTRMQCECPRHLAELLTALVGFERYSRQCEDESEEEAAL 296

Query: 309 HQYLQQLTSESRQRFEMALTRIAEHEGL 336
           H+ L      +R   E  L R+A+ +G+
Sbjct: 297 HRELCLAAGRARLPLEETLQRLAQVKGI 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 992,051
Number of extensions: 39479
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)