BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0064.p
         (439 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyas...   880   0.0  
gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyas...    67   3e-12

>gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 439

 Score =  880 bits (2274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/439 (99%), Positives = 438/439 (99%)

Query: 1   MYRKHQFDLLLDTVVAEEAVEPAALVSSASPASPTSFDLLTPLPTLAAARERIASVRPGA 60
           MYRKHQFDLLLDTVVAEEAVEPAALVSSASPASPTSFDLLTPLPTLAAARERIA+VRPGA
Sbjct: 1   MYRKHQFDLLLDTVVAEEAVEPAALVSSASPASPTSFDLLTPLPTLAAARERIAAVRPGA 60

Query: 61  YARTRNSLDGAVTGLSPYLTHGMVSLRDVLAGVCQRYPLEVQHKFVYELGWRAFYRYVWS 120
           YARTRNSLDGAVTGLSPYLTHGMVSLRDVLAGVCQRYPLEVQHKFVYELGWRAFYRYVWS
Sbjct: 61  YARTRNSLDGAVTGLSPYLTHGMVSLRDVLAGVCQRYPLEVQHKFVYELGWRAFYRYVWS 120

Query: 121 RRGARIFDSLHAGPLPEAAYARELPDDIRAGATGVPVIDQAVRTLYATGNLHNHARMWLA 180
           RRGARIFDSLHAGPLPEAAYARELPDDIRAGATGVPVIDQAVRTLYATGNLHNHARMWLA
Sbjct: 121 RRGARIFDSLHAGPLPEAAYARELPDDIRAGATGVPVIDQAVRTLYATGNLHNHARMWLA 180

Query: 181 SYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGSHKPYLFNAENVAKYAPPQ 240
           SYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGSHKPYLFNAENVAKYAPPQ
Sbjct: 181 SYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGSHKPYLFNAENVAKYAPPQ 240

Query: 241 WHSPGTALDVSYEALGELALQPDPVPAEPGGSRLVRCQEPALLAEPPSSLDVCAPDAQAV 300
           WHSPGTALDVSYEALGELALQPDPVPAEPGG RLVRCQEPALLAEPPSSLDVCAPDAQAV
Sbjct: 241 WHSPGTALDVSYEALGELALQPDPVPAEPGGRRLVRCQEPALLAEPPSSLDVCAPDAQAV 300

Query: 301 AGRDVWLVHPWSLGELPATLGPETVVVGLYLSDFHLLWPWDQRRWRFVGSRMRELTSLRW 360
           AGRDVWLVHPWSLGELPATLGPETVVVGLYLSDFHLLWPWDQRRWRFVGSRMRELTSLRW
Sbjct: 301 AGRDVWLVHPWSLGELPATLGPETVVVGLYLSDFHLLWPWDQRRWRFVGSRMRELTSLRW 360

Query: 361 HGDAASVGRALKAARSVRCQLDPHLAPWLPLWAQCQNPPALFPPVDKPCDLFTQWWRRST 420
           HGDAASVGRALKAARSVRCQLDPHLAPWLPLWAQCQNPPALFPPVDKPCDLFTQWWRRST
Sbjct: 361 HGDAASVGRALKAARSVRCQLDPHLAPWLPLWAQCQNPPALFPPVDKPCDLFTQWWRRST 420

Query: 421 QGLQTAAQLLAAEGRRDER 439
           QGLQTAAQLLAAEGRRDER
Sbjct: 421 QGLQTAAQLLAAEGRRDER 439


>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 26/192 (13%)

Query: 57  RPGAYARTRNSLDGAVTG---LSPYLTHGMVSLRDVLAGVCQRYPLEVQHK----FVYEL 109
           R G+Y   R+    AV G   LS +L  G +S+R +     Q             ++ EL
Sbjct: 233 RIGSYGAARDF--PAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAVWLSEL 290

Query: 110 GWRAFYRYVW------SRRGAR-IFDSLH--AGPLPEAAYARELPDDIRAGATGVPVIDQ 160
            WR FY  +       +R   +  +D++    GP  EA +A         G TG P++D 
Sbjct: 291 TWRDFYFMILHHHPRVTRHAFKPEYDAIQWEQGPQAEALFAAWCE-----GRTGYPLVDA 345

Query: 161 AVRTLYATGNLHNHARMWLASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGT 220
           A+  +  +G +HN  RM +AS++     + WR G  +   HL D DLA+N+  WQW + +
Sbjct: 346 AMAQINQSGYMHNRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSS 405

Query: 221 GSH-KPY--LFN 229
           G   +PY  +FN
Sbjct: 406 GCDAQPYFRIFN 417


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,478,774
Number of extensions: 67404
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 2
Length of query: 439
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 351
Effective length of database: 1,203,190
Effective search space: 422319690
Effective search space used: 422319690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)