BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0050.p
         (597 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp...    69   8e-13
gi|300310091|ref|YP_003774183.1| outer membrane protein and rela...    62   1e-10
gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri...    62   2e-10
gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser...    61   3e-10

>gi|300312990|ref|YP_003777082.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 44/69 (63%)

Query: 204 LLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNETEEG 263
           ++ VGHTD  GS   N  LS RRA +V  ++   GV A  +Y +G G+  PVA N+T  G
Sbjct: 128 IIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAG 187

Query: 264 RAKNRRVEI 272
           RAKNRRVEI
Sbjct: 188 RAKNRRVEI 196


>gi|300310091|ref|YP_003774183.1| outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Herbaspirillum
           seropedicae SmR1]
          Length = 271

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 56/118 (47%), Gaps = 19/118 (16%)

Query: 155 FESNSDQLTPRARDYFTAIAATYDVRKSAAEIQDLNLRKQYLEKMAQRKLLLVGHTDDTG 214
           FES    LTP  +     IAAT            L L+ +++E        ++G+TD+ G
Sbjct: 169 FESGQATLTPEGKRILDEIAATM-----------LKLKGRHVE--------IIGNTDNEG 209

Query: 215 SSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNETEEGRAKNRRVEI 272
               N  LS  RA AV  ++   GV    L   G G   PVASN T EGRAKNRR+E 
Sbjct: 210 LRASNISLSLARADAVKAYLGAKGVDESLLSTSGQGPDRPVASNATAEGRAKNRRIEF 267


>gi|300313671|ref|YP_003777763.1| OmpA family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%)

Query: 204 LLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNETEEG 263
           + +VGHTD+TGS  +N  LS +RA     ++   GVAA     QG G   P+ +N ++  
Sbjct: 142 VTIVGHTDNTGSDAINDPLSLQRASRTRDYLSSRGVAANRFSIQGRGSHEPLVANTSDAN 201

Query: 264 RAKNRRVEI 272
           RA+NRRVEI
Sbjct: 202 RARNRRVEI 210


>gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 267

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 19/117 (16%)

Query: 155 FESNSDQLTPRARDYFTAIAATYDVRKSAAEIQDLNLRKQYLEKMAQRKLLLVGHTDDTG 214
           FES    LTP  +     IAAT                   + ++  R++ ++G+TD+ G
Sbjct: 165 FESGRATLTPEGKRILDEIAAT-------------------MLQLKGRRVEIIGNTDNEG 205

Query: 215 SSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNETEEGRAKNRRVE 271
               N  LS  RA AV  ++   GV    L   G G   PVASN T EGRA+NRR+E
Sbjct: 206 LRASNISLSLARADAVKAYLSTKGVDDSLLTTSGQGPDRPVASNATSEGRARNRRIE 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,520,168
Number of extensions: 57660
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 4
Length of query: 597
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 506
Effective length of database: 1,188,985
Effective search space: 601626410
Effective search space used: 601626410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 133 (55.8 bits)