BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0043.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309773|ref|YP_003773865.1| major facilitator superfamily p...   763   0.0  
gi|300309620|ref|YP_003773712.1| major facilitator superfamily p...   233   2e-62

>gi|300309773|ref|YP_003773865.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/399 (99%), Positives = 398/399 (99%)

Query: 1   VPAAPPRPLTPAKVTRQIIATAFFTFLVYLAIGIPMAVLPGYIHLDLGYSSVMAGLGISV 60
           VPAAPPRPLTPAKVTRQIIATAFFTFLVYLAIGIPMAVLPGYIHLDLGYSSVMAGLGISV
Sbjct: 15  VPAAPPRPLTPAKVTRQIIATAFFTFLVYLAIGIPMAVLPGYIHLDLGYSSVMAGLGISV 74

Query: 61  QYFATFVSRANAGRMIDTVGAKQTVMRGMLLCSASGALLLCSALAQPLPFLSLVLLFASR 120
           QYFATFVSRANAGRMIDTVGAKQTVMRGMLLCSASGALLLCSALAQPLPFLSLVLLFASR
Sbjct: 75  QYFATFVSRANAGRMIDTVGAKQTVMRGMLLCSASGALLLCSALAQPLPFLSLVLLFASR 134

Query: 121 ALLGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYAALAIGAPLGVVLDRSLGFAM 180
           ALLGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYAALAIGAPLGVVLDRSLGFAM
Sbjct: 135 ALLGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYAALAIGAPLGVVLDRSLGFAM 194

Query: 181 IGLSGMLLTALGYVLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIATFI 240
           IGLSGMLLTALGYVLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIATFI
Sbjct: 195 IGLSGMLLTALGYVLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIATFI 254

Query: 241 TLYYADLHWSGAAFALTAFSSAFVGARLLFANAITRFGGYRVAVVSFLTEAVGLLLLWSA 300
           TLYYADLHWSGAAFALTAFSSAFVGARLLFANAITRFGGYRVAVVSFLTEAVGLLLLWS 
Sbjct: 255 TLYYADLHWSGAAFALTAFSSAFVGARLLFANAITRFGGYRVAVVSFLTEAVGLLLLWST 314

Query: 301 TTPELALLGAGLAGFGFALVFPSLGVEAVNLVSPANRGAALAAYSVFLDLALGITGPLAG 360
           TTPELALLGAGLAGFGFALVFPSLGVEAVNLVSPANRGAALAAYSVFLDLALGITGPLAG
Sbjct: 315 TTPELALLGAGLAGFGFALVFPSLGVEAVNLVSPANRGAALAAYSVFLDLALGITGPLAG 374

Query: 361 AIAGQLGYPQVFLFAAIAAIGAVALSLSLYRSAQQRGKP 399
           AIAGQLGYPQVFLFAAIAAIGAVALSLSLYRSAQQRGKP
Sbjct: 375 AIAGQLGYPQVFLFAAIAAIGAVALSLSLYRSAQQRGKP 413


>gi|300309620|ref|YP_003773712.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score =  233 bits (595), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 149/353 (42%), Positives = 206/353 (58%)

Query: 25  TFLVYLAIGIPMAVLPGYIHLDLGYSSVMAGLGISVQYFATFVSRANAGRMIDTVGAKQT 84
            F+ +L IG+ + VLP ++   LG ++ + G+ +  Q+ A  +SRA AG   D  GAK+ 
Sbjct: 33  VFIAFLTIGLQLPVLPLHLKDALGMNATVVGVVVGAQFAAALLSRAWAGNFADLRGAKRA 92

Query: 85  VMRGMLLCSASGALLLCSALAQPLPFLSLVLLFASRALLGLGESLVGTGAIMWGVGRVGS 144
           VM G +  + SG + L S      P  S+ +L   R +L LGESL+ TGA+ WG+G VG 
Sbjct: 93  VMAGFITAALSGLVYLASLALLGRPDWSVAVLLLGRVVLALGESLMVTGAMSWGIGLVGP 152

Query: 145 ENTAKMISWNGIATYAALAIGAPLGVVLDRSLGFAMIGLSGMLLTALGYVLARGGPVTPV 204
           ++  K+++W GIA YAA   GAPLGV +++  GFA I L+ + L+    +L         
Sbjct: 153 QHGGKVMAWLGIALYAAFGAGAPLGVAINQIYGFAGISLASVGLSLAALLLIAPLRAIAP 212

Query: 205 VQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSIATFITLYYADLHWSGAAFALTAFSSAFV 264
               +  F  VL  V+  G+GLAF ++GFG I  FI L +A   W  AA A +AF +AF+
Sbjct: 213 SAHRRTPFYQVLGAVWRPGLGLAFSSVGFGVITAFIALLFAARAWGNAALAFSAFGAAFI 272

Query: 265 GARLLFANAITRFGGYRVAVVSFLTEAVGLLLLWSATTPELALLGAGLAGFGFALVFPSL 324
            ARLLFA+   + GG RVA+V  L EA G LL+W A     A LGA L GFG++L FP  
Sbjct: 273 LARLLFAHLPDKLGGARVALVCVLIEAAGQLLIWQADAAHWAYLGAALTGFGYSLAFPGF 332

Query: 325 GVEAVNLVSPANRGAALAAYSVFLDLALGITGPLAGAIAGQLGYPQVFLFAAI 377
           GVEA+    P  RG A+ AY  FLDL+LGIT PLAG +A   G   ++L  A+
Sbjct: 333 GVEAMRRAPPQTRGLAMGAYVAFLDLSLGITSPLAGVLASHAGVQSIYLAGAV 385


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,128,523
Number of extensions: 47062
Number of successful extensions: 317
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)