BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0036.p
         (320 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309780|ref|YP_003773872.1| transcription regulator [Herbas...   654   0.0  
gi|300312385|ref|YP_003776477.1| SorC family transcription regul...    96   4e-21

>gi|300309780|ref|YP_003773872.1| transcription regulator
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/320 (100%), Positives = 320/320 (100%)

Query: 1   MSSSTSKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV 60
           MSSSTSKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV
Sbjct: 1   MSSSTSKLDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPV 60

Query: 61  SSCLELAQGLQERYGLDVCRVVPGAGGAGNPNESQEVQQMLAVAGAELMEQYLGSEAPLV 120
           SSCLELAQGLQERYGLDVCRVVPGAGGAGNPNESQEVQQMLAVAGAELMEQYLGSEAPLV
Sbjct: 61  SSCLELAQGLQERYGLDVCRVVPGAGGAGNPNESQEVQQMLAVAGAELMEQYLGSEAPLV 120

Query: 121 VNVGSGRTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP 180
           VNVGSGRTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP
Sbjct: 121 VNVGSGRTLKAAIERLSELERPQHQIVSMIGAFASDGSANRYDVALQAAEKLGARFYLLP 180

Query: 181 APRVAESESDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDGEVAEL 240
           APRVAESESDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDGEVAEL
Sbjct: 181 APRVAESESDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDGEVAEL 240

Query: 241 QRQGAVGEMICHAFDIDGVMLPSSLSARVTTPPLTQRPQRPVIAFCGGSKKAEAVRAALR 300
           QRQGAVGEMICHAFDIDGVMLPSSLSARVTTPPLTQRPQRPVIAFCGGSKKAEAVRAALR
Sbjct: 241 QRQGAVGEMICHAFDIDGVMLPSSLSARVTTPPLTQRPQRPVIAFCGGSKKAEAVRAALR 300

Query: 301 GGWLTGLVTDEVCARHALQD 320
           GGWLTGLVTDEVCARHALQD
Sbjct: 301 GGWLTGLVTDEVCARHALQD 320


>gi|300312385|ref|YP_003776477.1| SorC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 147/316 (46%), Gaps = 23/316 (7%)

Query: 10  LAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHP--VSSCLELA 67
           +A R A +YY    T   IA+ +G SR    R++++A +  LV++++  P  VS  LE A
Sbjct: 12  MAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVSGSLEAA 71

Query: 68  QGLQERYGLDVCRVVPGAGGAGNPNESQEVQQMLAVAGAELMEQYLGSEAP--LVVNVGS 125
             +   Y L   +VVP A  A    + + +Q++   A A     Y+ S      ++ +  
Sbjct: 72  --IANHYRLHSIQVVPVAAAA---TDKETLQRVTCHAAA-----YVNSLVTPGTIIGLAW 121

Query: 126 GRTLKAAIERLSELERPQHQI--VSMIGAFASDGSANRYD--VALQAAEKLGARFYLLPA 181
           G T+    ++L  L R  H +  V++ G+ +     N +   +  + A+  GAR + LP 
Sbjct: 122 GTTVAQIADQL--LPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPV 179

Query: 182 PRVAESESDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDGEVAELQ 241
           P   +    R      ++ K +  L ERA +    IG  A    +H  G++ + E   L+
Sbjct: 180 PAFFDYPETRTALWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILR 239

Query: 242 RQGAVGEMICHAFDIDGVMLPSSLSARVTTPPLTQRPQRPVIAFC--GGSKKAEAVRAAL 299
            +G VG++    F  DG     + +AR + P +     R   A C   G+ K   ++AAL
Sbjct: 240 DEGLVGDIATVFFRADGSWRDVAFNARNSGPDMDCF-TRAAHALCVVSGAGKLPGLKAAL 298

Query: 300 RGGWLTGLVTDEVCAR 315
           RGG++  L+ DE  AR
Sbjct: 299 RGGFINELIIDEPSAR 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 951,959
Number of extensions: 37591
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 320
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,217,395
Effective search space: 286087825
Effective search space used: 286087825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)