BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0031.p (372 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 402 e-113 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 280 1e-76 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 265 4e-72 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 254 1e-68 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 250 1e-67 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 402 bits (1033), Expect = e-113, Method: Compositional matrix adjust. Identities = 192/194 (98%), Positives = 194/194 (100%) Query: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 DIGARRMNEVPAAKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 DIGARRMNEVPA+KRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 DDLKTTMIYVTHDR 194 DDLKTTMIYVTHD+ Sbjct: 181 DDLKTTMIYVTHDQ 194 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 280 bits (717), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 135/197 (68%), Positives = 161/197 (81%), Gaps = 1/197 (0%) Query: 1 MAAVSIRNLAKRYDDN-EVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGD 59 MA V+I+ L K YD +V+ +NL+I DGEF V VGPSGCGKSTLLRM+ GLEEIS G+ Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 60 LDIGARRMNEVPAAKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAK 119 L IG + +N +P A+RG+AMVFQSYALYPHM++Y NMAFGLK+AG SK++IDA ++HAA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKL 179 IL IDHLL R PR LSGGQRQRVAIGRAI RQP +FLFDEPLSNLDAALRV+ RLE AKL Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 180 HDDLKTTMIYVTHDRSK 196 H L T++YVTHD+ + Sbjct: 181 HRQLAATIVYVTHDQVE 197 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 265 bits (678), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 133/239 (55%), Positives = 170/239 (71%), Gaps = 5/239 (2%) Query: 1 MAAVSIRNLAKRYDDN----EVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEIS 56 MAA+ ++ + K Y +V+ I+ EI DGEF+V VGPSGCGKSTLLRM+AGLEEIS Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 DGDLDIGARRMNEVPAAKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQH 116 G + IG R +N++ +R +AMVFQ+YALYPHM++Y NMA+GLKI G SK+EIDA VQ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 AAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEF 176 AA IL + LL+R PR LSGGQRQRVA+GRAI R+P+VFLFDEPLSNLDA LRV+MRLE Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 177 AKLHDDLKTTMIYVTHDRSKP*PWPTRS*CSPRAASNRSVRPSSCITIRPIASWPASSV 235 KLH L+TT +YVTHD+ + R R + + P+ + RP ++ AS + Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAE-VYARPATTFVASFI 238 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 254 bits (648), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 120/194 (61%), Positives = 149/194 (76%) Query: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 MA+V IR + K++ +++R ++++I DGEF V VGPSGCGKSTLLRM+AGLEEI+ G++ Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 DIGARRMNEVPAAKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 IG +N V R +AMVFQ+YALYPHM++ DNMAF L +A K KA +D V+ AA I Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 L ++ LLDR PR LSGGQRQRVA+GRAI R P VFLFDEPLSNLDA LRV+MR E +LH Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 DDLKTTMIYVTHDR 194 LKTT IYVTHD+ Sbjct: 181 QRLKTTSIYVTHDQ 194 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 250 bits (639), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 118/198 (59%), Positives = 159/198 (80%), Gaps = 2/198 (1%) Query: 1 MAAVSIRNLAKRYDDNE-VMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGD 59 MA++++R K Y D V+R+++L+I + EF VF+GPSGCGKSTLLR IAGLE+++ GD Sbjct: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 Query: 60 LDIGARRMNEVPAAKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAK 119 L IG +R+N+VP+A+R VAMVFQSYAL+PHM++Y+NM+FGL +A KAEI+ V+ AA+ Sbjct: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 Query: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKL 179 IL ++ LL RKP+ LSGGQRQRVAIGRAI R+P VFLFDEPLSNLDA LR + R+E A+L Sbjct: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 Query: 180 HDDL-KTTMIYVTHDRSK 196 H + +++YVTHD+ + Sbjct: 181 HRQFEQASVVYVTHDQVE 198 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.331 0.137 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 922,122 Number of extensions: 33097 Number of successful extensions: 485 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 324 Number of HSP's successfully gapped: 136 Length of query: 372 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 285 Effective length of database: 1,207,925 Effective search space: 344258625 Effective search space used: 344258625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 131 (55.1 bits)