BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0027.p (520 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 1045 0.0 gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans... 578 e-166 gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans... 376 e-105 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 335 5e-93 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 330 2e-91 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 1045 bits (2701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/520 (99%), Positives = 519/520 (99%) Query: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD Sbjct: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 Query: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER Sbjct: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLTIQ 180 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIML IQ Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQ 180 Query: 181 LAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVR 240 LAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVR Sbjct: 181 LAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVR 240 Query: 241 IETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAA 300 IETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAA Sbjct: 241 IETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAA 300 Query: 301 NLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHK 360 NLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHK Sbjct: 301 NLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHK 360 Query: 361 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL 420 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL Sbjct: 361 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL 420 Query: 421 IDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQM 480 IDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQM Sbjct: 421 IDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQM 480 Query: 481 DASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNRR 520 DASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNRR Sbjct: 481 DASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNRR 520 >gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 578 bits (1491), Expect = e-166, Method: Compositional matrix adjust. Identities = 310/525 (59%), Positives = 392/525 (74%), Gaps = 9/525 (1%) Query: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 MR N+P+T ERLL DGK+IVSKTDL+GNI YVNPYFIEISGFEE EL+GAPQN++RHP+ Sbjct: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 Query: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 MP EAFADMWAT+K G PW GLVKNR KNGD+YWV+ANVTP+RENG+ VGYMSVRT+P R Sbjct: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIM-LTI 179 + V AE Y GQA+G+ +HRG VVRTGL GWL L + + RL +MG++ L Sbjct: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMF 180 Query: 180 QLAVVVAGMAALHQW------WISALAAAAALLSIVQWIALRNALIKPLHQALDITHAIT 233 L VAG A + W+ AA AL+ + W L +++ PL +A+ H + Sbjct: 181 ILGGAVAGNAVMSAGGSPFAVWLGT--AAGALMLLASWAMLHASIVAPLQRAIKAVHGLA 238 Query: 234 GGDLSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSR 293 GGDL I+TT ++G LL++L+Q+NVNL AIIGDVR NVE++T++T EIA+GN+DLS Sbjct: 239 GGDLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSG 298 Query: 294 RTEAQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNE 353 RTEAQA+ LEETASS+ E A+TVRQNAD A A+ A +ASAIA RGG +V G TM E Sbjct: 299 RTEAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEE 358 Query: 354 ISESSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAA 413 I +SHKIVDII LID I+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAA Sbjct: 359 IDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAA 418 Query: 414 AKEIKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQV 473 AK+IK LID S KV+ GN+ V + M ++ +V+ ++ M EI A+ +QS GI Q+ Sbjct: 419 AKDIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQL 478 Query: 474 HEAITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFN 518 ++A+ +D +TQQNA+LVE+AAAAA +L++Q V+L QA+SVFK + Sbjct: 479 NQAVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKIS 523 >gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 376 bits (966), Expect = e-105, Method: Compositional matrix adjust. Identities = 223/503 (44%), Positives = 314/503 (62%), Gaps = 15/503 (2%) Query: 21 VSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPDMPAEAFADMWATIKGGTPWT 80 +S TD +TY N F+E+SGF +L+G P N++RHPDMP EAFADMWAT++ G WT Sbjct: 1 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 60 Query: 81 GLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPERDAVAGAEKLYASIRRGQAKG 140 +VKNR +G HYWVRANVTPIR G I G++SVRT+P + A LY R G+A+G Sbjct: 61 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAALYRRFREGRARG 120 Query: 141 IALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLTIQLAVVVAGMAALHQWWISALA 200 + G VVR+GL GW +RL + + ++LA+ G+ AL ++ Sbjct: 121 LRFCHGLVVRSGLLGW----------TRLEQVLPVRWRLRLALAAGGLTALAGGILAGAP 170 Query: 201 AAAALLSIVQWIAL-----RNALIKPLHQALDITHAITGGDLSVRIETTRHDELGRLLRS 255 A S++ +AL L PL L A+ G + R DE+G LLR+ Sbjct: 171 LAPMAASVLPPLALACLWLERRLAAPLELVLQQAKAVACGQPAQTQGLDRIDEIGLLLRA 230 Query: 256 LRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETASSMHELAST 315 + Q +NL A+I DV + V+ + A+R+IAS N DL +RT A L++TAS+ ++A+ Sbjct: 231 VNQSGLNLRALIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMATA 290 Query: 316 VRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHKIVDIISLIDSIAFQT 375 VR +AD A A+ A S A +G D V TM++I+++S +I +I LIDSIAFQT Sbjct: 291 VRHSADSAQAAHAQARQTSQAAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQT 350 Query: 376 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDASVEKVDIGNRQV 435 NILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSA+AA+EIK LI SV + G ++ Sbjct: 351 NILALNAAVEAARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQRA 410 Query: 436 EQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAA 495 EQA + + IVA Q +S ++G I + +QS G++QV ++ +D TQQNA++VE +A Sbjct: 411 EQAAAAIESIVAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHSA 470 Query: 496 AAAGSLQEQTVRLLQAISVFKFN 518 AA ++Q++ L QA++VF+ + Sbjct: 471 AAVAAMQQRMQTLQQAVAVFEHD 493 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 335 bits (860), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 190/303 (62%), Positives = 240/303 (79%) Query: 218 LIKPLHQALDITHAITGGDLSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETI 277 + KPLH+A+D++ + GDLS I T DE G+LL+SL+ MN +L I+ +VRS +TI Sbjct: 215 ITKPLHRAVDVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTI 274 Query: 278 TLATREIASGNLDLSRRTEAQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIA 337 + A+ EIA+GNLDLS RTE QA++L ETAS+M EL STVRQNAD+A QA+ LA +ASA+A Sbjct: 275 STASSEIAAGNLDLSSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANSASAVA 334 Query: 338 MRGGDAVASTGTTMNEISESSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFA 397 +GG V+ TM I+ SS KIVDIIS+ID IAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 335 EQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 394 Query: 398 VVASEVRSLAQRSAAAAKEIKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMG 457 VVASEVR+LAQRSA+AAKEIKELI+ SV KVD G+R VEQA +TM+++V+SV+RV+ I+ Sbjct: 395 VVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVA 454 Query: 458 EIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKF 517 EI A+ +Q+ GI Q++ AITQMD TQQNA+LVEEAAAAA S+Q Q RL+Q +SVF+ Sbjct: 455 EISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 Query: 518 NRR 520 + R Sbjct: 515 SER 517 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 330 bits (846), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 190/322 (59%), Positives = 244/322 (75%) Query: 198 ALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVRIETTRHDELGRLLRSLR 257 A + AA L +I+ + +++KPL +A+ + + GDL+ RIE DE G+L+++LR Sbjct: 197 ACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALR 256 Query: 258 QMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETASSMHELASTVR 317 +MN NL I+ VR E+IT A+ EIASGNLDLS RTE QA +LEETAS+M E+ STVR Sbjct: 257 KMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVR 316 Query: 318 QNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHKIVDIISLIDSIAFQTNI 377 QNAD+A QAN +A +AS IA++GG V TM+EI++SS KIVDII +ID IAFQTNI Sbjct: 317 QNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNI 376 Query: 378 LALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDASVEKVDIGNRQVEQ 437 LALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LI SV KV+ G+ V Q Sbjct: 377 LALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQ 436 Query: 438 ATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAAAA 497 A +TM +V+SV+ V+ I+ EI A+ +QS+GI +++ A+TQMD TQQNA+LVE+AAAA Sbjct: 437 AGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAA 496 Query: 498 AGSLQEQTVRLLQAISVFKFNR 519 A S+QEQ VRL Q+IS+FK + Sbjct: 497 AKSMQEQAVRLTQSISIFKLEQ 518 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.128 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,347,446 Number of extensions: 51788 Number of successful extensions: 564 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 343 Number of HSP's successfully gapped: 70 Length of query: 520 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 431 Effective length of database: 1,198,455 Effective search space: 516534105 Effective search space used: 516534105 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)