BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0023.p
         (230 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309793|ref|YP_003773885.1| hypothetical protein Hsero_0452...   467   e-133
gi|300312436|ref|YP_003776528.1| hypothetical protein Hsero_3136...    94   1e-20
gi|300309912|ref|YP_003774004.1| hypothetical protein Hsero_0577...    75   4e-15

>gi|300309793|ref|YP_003773885.1| hypothetical protein Hsero_0452
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  467 bits (1201), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MPVAKAYLTQLFLSTLYMLALFGSIMAAVLTLPLVVPASLEQQLGVQPWMDQAASEPGEL 60
           MPVAKAYLTQLFLSTLYMLALFGSIMAAVLTLPLVVPASLEQQLGVQPWMDQAASEPGEL
Sbjct: 1   MPVAKAYLTQLFLSTLYMLALFGSIMAAVLTLPLVVPASLEQQLGVQPWMDQAASEPGEL 60

Query: 61  YCILGAILACVLGLFYRSMNRVVAPAKAGPRLNYQTATLLYMLAMSYGLAIFVTTGLAPQ 120
           YCILGAILACVLGLFYRSMNRVVAPAKAGPRLNYQTATLLYMLAMSYGLAIFVTTGLAPQ
Sbjct: 61  YCILGAILACVLGLFYRSMNRVVAPAKAGPRLNYQTATLLYMLAMSYGLAIFVTTGLAPQ 120

Query: 121 YRDCETYTQKLNGGVRQYRGLSFRVELCGAGPRESDRLDRVRLRIYDESGDLRAVRYFGV 180
           YRDCETYTQKLNGGVRQYRGLSFRVELCGAGPRESDRLDRVRLRIYDESGDLRAVRYFGV
Sbjct: 121 YRDCETYTQKLNGGVRQYRGLSFRVELCGAGPRESDRLDRVRLRIYDESGDLRAVRYFGV 180

Query: 181 QWGRDFPALLEYSRDHLSYFDAGDEEDFARVIAMPPTLADWVQTRIPLLD 230
           QWGRDFPALLEYSRDHLSYFDAGDEEDFARVIAMPPTLADWVQTRIPLLD
Sbjct: 181 QWGRDFPALLEYSRDHLSYFDAGDEEDFARVIAMPPTLADWVQTRIPLLD 230


>gi|300312436|ref|YP_003776528.1| hypothetical protein Hsero_3136
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score = 93.6 bits (231), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 17/160 (10%)

Query: 82  VVAPAKAGPRLNYQTATLLYMLAMSYGLAIFVTTGLA-------PQYRDCETYTQ--KLN 132
           V   A+  P  + QT T+ +     +GLA+ V+  L        P Y  C+ Y +   L+
Sbjct: 44  VAVAAQPQPWRDMQTRTVKF-----FGLALLVSLALGLIIHFTRPHYGRCDFYNRPDTLD 98

Query: 133 GGVRQYRGLSFRVELCGAGPRESDRLD-RVRLRIYDESGDLRAVRYFGVQW--GRDFPAL 189
           GGV+   G S+R ++CG G  + D  D ++ L+++++ G L A RYF V W  G+ F   
Sbjct: 99  GGVKLLNGTSYRFQMCGTGGNDQDGTDDKIELKVFNDQGTLLARRYFSVNWYAGKGFHQP 158

Query: 190 LEYSRDHLSYFDAGDEEDFARVIAMPPTLADWVQTRIPLL 229
           L Y  D + Y D  +  ++ + +++PPT  DW++ R+PL 
Sbjct: 159 LTYENDSVRYIDVTENSEYEKRLSIPPTKWDWIRARLPLF 198


>gi|300309912|ref|YP_003774004.1| hypothetical protein Hsero_0577
           [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 75.5 bits (184), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 9/126 (7%)

Query: 109 LAIFVTTGLA-----PQYRDCETYTQKLNGGVRQYRGLSFRVELCGAGPRESDRLDRVRL 163
           + +++  GL      P Y  CE++T+ LNGG + + G  + ++LCGA  +      ++RL
Sbjct: 1   MVVYIGFGLCAHLAQPTYGRCESFTKDLNGGEKIFHGAMYDIKLCGADIKNG---TKIRL 57

Query: 164 RIYDESGDLRAVRYFGVQWGRDFPALLEYSRDHLSYFDAGDEEDFARVIAMPPTLADWVQ 223
           +++  SGDL A RYF           L    D + YFD+  E    + I++PPT  DW++
Sbjct: 58  QVFGRSGDLLAERYFSYYVNSATERDLTEGVDSIIYFDSARESPM-QSISIPPTKWDWIR 116

Query: 224 TRIPLL 229
            R+PL 
Sbjct: 117 ARLPLF 122


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 746,867
Number of extensions: 31543
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 3
Length of query: 230
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,231,600
Effective search space: 182276800
Effective search space used: 182276800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)