BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0021.p
         (916 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herba...  1885   0.0  

>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein
           [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score = 1885 bits (4884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 913/916 (99%), Positives = 916/916 (100%)

Query: 1   LLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDAKGKT 60
           LLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDAKGKT
Sbjct: 5   LLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDAKGKT 64

Query: 61  FRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQATAA 120
           FRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQATAA
Sbjct: 65  FRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQATAA 124

Query: 121 GLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLIGDTVD 180
           GLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLIGDTVD
Sbjct: 125 GLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLIGDTVD 184

Query: 181 NVPGVEKCGPKTAVKWLTAYGSLDGVMANADKISGVVGENLRRALDWLPQGRVLVTVKTD 240
           NVPGVEKCGPKTAVKWLTAYG+LDGVMANADKISGVVGENLRRALDWLPQGRVLVTVKTD
Sbjct: 185 NVPGVEKCGPKTAVKWLTAYGTLDGVMANADKISGVVGENLRRALDWLPQGRVLVTVKTD 244

Query: 241 CDLSAHMSSILESLTMQPQDKDVLKELFTRYNFRTWLRELSDGAEAGASKAPMVGASAAA 300
           CDLSAHMSSILESLTMQPQDKDVLKELFTRYNFRTWLRELSDGAEAGASKAPMVGASAAA
Sbjct: 245 CDLSAHMSSILESLTMQPQDKDVLKELFTRYNFRTWLRELSDGAEAGASKAPMVGASAAA 304

Query: 301 ALEAPAQGGLFAAAPKVEYETVLTDAQLDQWIATINAAELTAVDTETTSLEAMQAELVGI 360
           ALEAPAQGGLFAAAPKVEYETVLTDAQLDQWIATINAAELTAVDTETTSLEAMQAELVGI
Sbjct: 305 ALEAPAQGGLFAAAPKVEYETVLTDAQLDQWIATINAAELTAVDTETTSLEAMQAELVGI 364

Query: 361 SLCCEPGRAAYIPVAHNYQDAPVQLSRQHVLEKLKPWLEDASKPKLGQHLKYDSHIFANY 420
           SLCCEPGRAAYIPVAHNYQDAPVQLSRQHVLEKLKPWLEDASKPKLGQHLKYDSHIFANY
Sbjct: 365 SLCCEPGRAAYIPVAHNYQDAPVQLSRQHVLEKLKPWLEDASKPKLGQHLKYDSHIFANY 424

Query: 421 GVRLAGVQHDTLLESYVFESHRPHDMDSLAARHLERKTITYAEVCGKGASQIGFNEVAIE 480
           GVRLAGV+HDTLLESYVFESHRPHDMDSLAARHLERKTITYAEVCGKGASQIGFNEVAIE
Sbjct: 425 GVRLAGVKHDTLLESYVFESHRPHDMDSLAARHLERKTITYAEVCGKGASQIGFNEVAIE 484

Query: 481 RATEYAAEDAEVTLALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLIDSERL 540
           RATEYAAEDAEVTLALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLIDSERL
Sbjct: 485 RATEYAAEDAEVTLALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLIDSERL 544

Query: 541 GQQSHDLGKRMLEIEQQAYDLAGQPFNLNSPKQLGEILFGKLELPVVKKTASGAPSTDEE 600
           GQQSHDLGKRMLEIEQQAYDLAGQPFNLNSPKQLGEILFGKLELPVVKKTASGAPSTDEE
Sbjct: 545 GQQSHDLGKRMLEIEQQAYDLAGQPFNLNSPKQLGEILFGKLELPVVKKTASGAPSTDEE 604

Query: 601 VLQKLAEDYPLPKVLLDYRGLAKLKSTYTDKLPKMVNPATGRVHTNYAQAVAVTGRLSSN 660
           VLQKLAEDYPLPKVLLDYRGLAKLKSTYTDKLPKMVNPATGRVHTNYAQAVAVTGRLSSN
Sbjct: 605 VLQKLAEDYPLPKVLLDYRGLAKLKSTYTDKLPKMVNPATGRVHTNYAQAVAVTGRLSSN 664

Query: 661 DPNLQNIPIRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFANNED 720
           DPNLQNIPIRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFANNED
Sbjct: 665 DPNLQNIPIRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFANNED 724

Query: 721 IHRATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLASNLGIERAAAQMYIDKYF 780
           IHRATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLASNLGIERAAAQMYIDKYF
Sbjct: 725 IHRATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLASNLGIERAAAQMYIDKYF 784

Query: 781 MRFSGVKRYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGTA 840
           MRFSGVKRYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGTA
Sbjct: 785 MRFSGVKRYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGTA 844

Query: 841 ADLIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEVVREKLPELMKNVAELKV 900
           ADLIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELE+VREKLPELMKNVAELKV
Sbjct: 845 ADLIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEMVREKLPELMKNVAELKV 904

Query: 901 PLLAEVGIGKNWDEAH 916
           PLLAEVGIGKNWDEAH
Sbjct: 905 PLLAEVGIGKNWDEAH 920


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,744,782
Number of extensions: 113033
Number of successful extensions: 377
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 1
Length of query: 916
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 822
Effective length of database: 1,174,780
Effective search space: 965669160
Effective search space used: 965669160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)