BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0020.p (563 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 1120 0.0 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 440 e-124 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 428 e-121 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 418 e-118 gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 405 e-114 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 1120 bits (2898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/563 (99%), Positives = 562/563 (99%) Query: 1 MKSGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLET 60 MKSGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLET Sbjct: 1 MKSGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLET 60 Query: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALP 120 VGERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALP Sbjct: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALP 120 Query: 121 KIAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKE 180 KIAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKE Sbjct: 121 KIAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKE 180 Query: 181 AAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGD 240 AAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGD Sbjct: 181 AAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGD 240 Query: 241 LAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQ 300 LAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQ Sbjct: 241 LAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQ 300 Query: 301 QAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVETMQSINAS 360 QAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVV+TMQSINAS Sbjct: 301 QAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINAS 360 Query: 361 SQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI 420 SQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI Sbjct: 361 SQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI 420 Query: 421 KVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAI 480 KVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAI Sbjct: 421 KVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAI 480 Query: 481 IQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQAHGHIAAPAHAPAAVE 540 IQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQAHGH AAPAHAPAAVE Sbjct: 481 IQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQAHGHTAAPAHAPAAVE 540 Query: 541 RVIDVTPGAPELPAGGNVLAVQG 563 RVIDVTPGAPELPAGGNVLAVQG Sbjct: 541 RVIDVTPGAPELPAGGNVLAVQG 563 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 440 bits (1131), Expect = e-124, Method: Compositional matrix adjust. Identities = 269/539 (49%), Positives = 362/539 (67%), Gaps = 12/539 (2%) Query: 1 MKSGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLET 60 M MK+GT+L LGF +V+L +LV+G + ++ + V+ V++ + A + E Sbjct: 1 MFKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREA 60 Query: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALP 120 + + I+ RN + + D E ++ Q Y A + L LFA + + L Sbjct: 61 LDQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQ 120 Query: 121 KIAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKE 180 A+ K +L E+ R E Y FL + P+++ ++ + A + N Sbjct: 121 --MAEELKRPRLYRES----GRSEEYR--DFLVNECSPLRRQIVSDIGTVLAQVEAENNR 172 Query: 181 AAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGD 240 A +A+ A + + +++ + VV ++L A LTR LL++LGGEP YA QIA QIA+GD Sbjct: 173 AQDATDKMAQLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGD 232 Query: 241 LAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQ 300 L + T+ GD+ SL+ A++ MRD L +IVA+VR+G+ TI ASSEIA GNLDLS RTEQ Sbjct: 233 LTANVQTKTGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQ 292 Query: 301 QAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVETMQSINAS 360 QA +LEETAS+ME+L +TVKQNA+NA QA+ LA++AS+VA QGG +V+QVV TM INAS Sbjct: 293 QASSLEETASAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINAS 352 Query: 361 SQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEI 420 S+K+ DI+SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEI Sbjct: 353 SRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEI 412 Query: 421 KVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAI 480 LI DSV ++E GS LVEQAG TM ++V S++RVTDV+ EI+ A++EQS GI QVN AI Sbjct: 413 TELINDSVSQIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAI 472 Query: 481 IQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQA----HGHIAAPAHA 535 +D+ TQQN+ALVE+AAAAA S++EQA L LV+ FRLDA QA + +APAHA Sbjct: 473 THMDEATQQNSALVEEAAAAANSMKEQAGALSGLVATFRLDAQQARQSGYSQASAPAHA 531 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 428 bits (1100), Expect = e-121, Method: Compositional matrix adjust. Identities = 248/550 (45%), Positives = 355/550 (64%), Gaps = 8/550 (1%) Query: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 +K+ TRL LGF +++ L+ ++ G++ M +V T + +V N E LV + + +R Sbjct: 4 LKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQR 63 Query: 65 SISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPKIAA 124 ++++RN+ L D+ +E+Q + Q Y A L ++F + T++ E+ L +I Sbjct: 64 ALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQIKN 123 Query: 125 QASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAAEA 184 + L+ +AV+ G +A E + L Q P Q++W L LA EDQLN EAA + Sbjct: 124 DEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEAATS 183 Query: 185 SAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVV 244 + Y+ RM+ + + ++ V A+ + R +LR+LG EP A +A IA GDL Sbjct: 184 ARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDLTAT 243 Query: 245 IDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGA 304 + R GD SLMA++ MR +L I ++ +ETI+ AS +IA+GN DLS RTE+QA + Sbjct: 244 VRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQAAS 303 Query: 305 LEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVETMQSINASSQKV 364 LEETA+SME+L +TV+QN ++A +A L+ A++ A G +VV+TM I ASS K+ Sbjct: 304 LEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITASSSKM 363 Query: 365 ADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLI 424 +DI+SVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI Sbjct: 364 SDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIKELI 423 Query: 425 GDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQID 484 G+S+ V GS+LV AG M IV S++R ++M I A +EQ SGIEQ+N A++Q+D Sbjct: 424 GESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMVQMD 483 Query: 485 DMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQAHGHIAAPAHAPAAVERVID 544 +TQQNAALVE+A+AAA+SL +QA+GL ++VSVF++ + +AAP AA+ R Sbjct: 484 QVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI---RQDRSLAAPLE-QAALTR--- 536 Query: 545 VTPGAPELPA 554 TPG P +PA Sbjct: 537 -TPGMPGMPA 545 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 418 bits (1074), Expect = e-118, Method: Compositional matrix adjust. Identities = 250/520 (48%), Positives = 355/520 (68%), Gaps = 2/520 (0%) Query: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 +K+ TRL LGFA VV+LLV+++ G++ M V+G + +V N + L M +V R Sbjct: 4 LKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIV-ANNQQGGLADVMNNSVRIR 62 Query: 65 SISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPKIAA 124 ++++RN+ L P + E + I+ Q Y+ A +KL ++F + DT+ E IA Sbjct: 63 ALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMF-DQPDTTRREHELFDLIAQ 121 Query: 125 QASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAAEA 184 A+ E L+N+AV ++ ++ EL L ++ PVQ W L L ED+LN +A+ A Sbjct: 122 NAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQASAA 181 Query: 185 SAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVV 244 + Y + A V+ AV AAF + R +L +LGGEP A ++A QIA+G+LAV Sbjct: 182 ADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVS 241 Query: 245 IDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGA 304 I GD SLMA++ MR +L IV ++ +E+I+TA+S+IA GNLDLS RTE+QA + Sbjct: 242 IPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAAS 301 Query: 305 LEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVETMQSINASSQKV 364 LEETASSME++ STV+QN +NA Q + LA +AS A +GG +V +VV TM+ I+ S+ K+ Sbjct: 302 LEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYKI 361 Query: 365 ADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLI 424 +I++ ++GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAS+AKEI+ LI Sbjct: 362 TEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGLI 421 Query: 425 GDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQID 484 SV VE G KLV++AG TM ++V SI++V D+M+EI A+ EQSSGI Q+N AI Q+D Sbjct: 422 ESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQMD 481 Query: 485 DMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQ 524 ++TQQNAALVE++A+AA+S+ +QA L+ V+VFR++ Q Sbjct: 482 EVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRIEQPQ 521 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 405 bits (1041), Expect = e-114, Method: Compositional matrix adjust. Identities = 260/533 (48%), Positives = 358/533 (67%), Gaps = 20/533 (3%) Query: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEML------ 58 MK+GT+L LGFA ++ L +++ G +F+++++ G +K + V+ +L Sbjct: 15 MKIGTKLSLGFALLLTLTIILAGISLFSINRLTG------SIKAADDVQVERLLPLYLAR 68 Query: 59 ETVGERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAA 118 E + + ++ RN + D E ++ Q Y A + ++ F D+ + Sbjct: 69 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFV-GHKGFDKVRTG 127 Query: 119 LPKIAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLN 178 L ++A + K ++ E+ GK E FL + P+++ +++ + D N Sbjct: 128 LLQMAEEL-KRPRIYRES---GKMEE---FRDFLVNECSPLRRQIVLDINKVIEEADADN 180 Query: 179 KEAAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAE 238 +A + + + A L+ +++ I V + L AF +TR LL++LGGEP YA IA QIA Sbjct: 181 IKAHQTTVDMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIAS 240 Query: 239 GDLAVVIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRT 298 GDL +D + GD SL+ A++ MRD LAAIV +VR+G+ I AS+EIA GN+DLS RT Sbjct: 241 GDLTADVDAKPGDTTSLLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRT 300 Query: 299 EQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVETMQSIN 358 EQQAGALEETAS+ME+L STVKQNA+NA QA+ LA++ASDVA QGG +V QVV TM+ IN Sbjct: 301 EQQAGALEETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGIN 360 Query: 359 ASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAK 418 ASS+K+ DI+SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAK Sbjct: 361 ASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAK 420 Query: 419 EIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNE 478 EI LI DSVG++E GS LV QAG+TM ++VTS++RVTDV+ EI+HA++EQS GI QVN Sbjct: 421 EITDLINDSVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNL 480 Query: 479 AIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQAHGHIAA 531 AI +D+ TQQN+ALVE+AAAAA S++ QA L LVS F+L + A G ++A Sbjct: 481 AITHMDEATQQNSALVEEAAAAANSMKTQAEQLAGLVSTFKLAHSPAPGPVSA 533 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.126 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,266,110 Number of extensions: 41969 Number of successful extensions: 564 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 279 Number of HSP's successfully gapped: 70 Length of query: 563 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 473 Effective length of database: 1,193,720 Effective search space: 564629560 Effective search space used: 564629560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)