BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0014.p (285 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 567 e-163 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 198 5e-52 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 181 7e-47 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 177 6e-46 gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 176 2e-45 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 567 bits (1462), Expect = e-163, Method: Compositional matrix adjust. Identities = 277/278 (99%), Positives = 277/278 (99%) Query: 8 MSQAAAWEQQSAAAAAAPVLSAQRVEKTYRNGTHALDEVRLDIGRGEFVSLLGPSGCGKS 67 MSQAAAWEQQSAAAAAAPVLSAQRVEKTYRNGTHALDEVRLDIGRGEFVSLLGPSGCGKS Sbjct: 1 MSQAAAWEQQSAAAAAAPVLSAQRVEKTYRNGTHALDEVRLDIGRGEFVSLLGPSGCGKS 60 Query: 68 TLLKMFAGLEEPSHGHIRWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLR 127 TLLKMFAGLEEPSHGHIRWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLR Sbjct: 61 TLLKMFAGLEEPSHGHIRWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLR 120 Query: 128 HVPRAQADARVAASLKRVGLESFHAVLPRELSGGMQMRASIARALATSPNLLLMDEPFGA 187 HVPRAQADARVAASLKRVGLESFHAVLPRELSGGMQMRASIARALATSPNLLLMDEPFGA Sbjct: 121 HVPRAQADARVAASLKRVGLESFHAVLPRELSGGMQMRASIARALATSPNLLLMDEPFGA 180 Query: 188 LDEFTRNKLDADLRDIWSRQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIDAS 247 LDEFTRNKLDADLRDIWSRQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIDA Sbjct: 181 LDEFTRNKLDADLRDIWSRQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIDAP 240 Query: 248 GPRDEAFRMSAPFMQYCKTLSDYLTLANQQGDGHEAQH 285 GPRDEAFRMSAPFMQYCKTLSDYLTLANQQGDGHEAQH Sbjct: 241 GPRDEAFRMSAPFMQYCKTLSDYLTLANQQGDGHEAQH 278 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 198 bits (503), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 141/234 (60%), Gaps = 6/234 (2%) Query: 23 AAPVLSAQRVEKTYRNGTH---ALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEP 79 A+P + Q V K ++ AL ++ LDI G+FV LLGPSGCGKSTLL AG P Sbjct: 6 ASPRIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALP 65 Query: 80 SHGHIRWWGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQADARVA 139 S G I ++ G P+R MVFQE L PW TVEQNV L+++ P+A+ RV Sbjct: 66 SSGQILTDDKVVSEPG-PDR--GMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVT 122 Query: 140 ASLKRVGLESFHAVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDAD 199 L ++GL F P++LSGGM+ R +IAR LA ++LMDEPFGALD TR L + Sbjct: 123 QLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDE 182 Query: 200 LRDIWSRQDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIDASGPRDEA 253 L IW T+VFVTHSI EA++L+ R++VM RPG V D+ ++ RD A Sbjct: 183 LLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPA 236 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 181 bits (458), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 123/206 (59%), Gaps = 3/206 (1%) Query: 40 THALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNLATVGTPER 99 HALD V LDI G FV LG SGCGKSTLL AG S G I G V P Sbjct: 19 VHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDG---QPVSGPGA 75 Query: 100 TLAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQADARVAASLKRVGLESFHAVLPRELS 159 +VFQ+ +L+PW +V+ NV L L V ++ + R L+ VGL+ F P ELS Sbjct: 76 ERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELS 135 Query: 160 GGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSRQDLTVVFVTHSIY 219 GGM+ R +ARALA +P +LLMDEPFGALD TR ++ L +W+R V F+THSI Sbjct: 136 GGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIE 195 Query: 220 EAVFLSSRVIVMAARPGRVIADVAID 245 EA+FL + VIVM+ RPGR++A D Sbjct: 196 EALFLGTEVIVMSPRPGRIVARFETD 221 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 177 bits (450), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 134/218 (61%), Gaps = 4/218 (1%) Query: 27 LSAQRVEKTYRNGTHALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRW 86 LS V K + + H ++E +I GE V+L+GPSGCGKSTLL M AGLE+PS G + Sbjct: 3 LSFNNVAKHFGD-LHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSV-- 59 Query: 87 WGGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQADARVAASLKRVG 146 G+ T+ P ++FQE L PW T++QNV L L+ + V + +A + L+ V Sbjct: 60 -AGDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVK 118 Query: 147 LESFHAVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSR 206 L+ F P ++SGGM+ RA++ARA + P LL+DEPFGALD TR L LRD+ + Sbjct: 119 LKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQ 178 Query: 207 QDLTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAI 244 Q TVV VTH + EA+FL+ R+ V + RP +V+ + + Sbjct: 179 QGPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNL 216 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 128/206 (62%), Gaps = 10/206 (4%) Query: 42 ALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNLATVGTPERTL 101 A++++ L GEF++++GPSGCGKST +K+ GL++P+ G + G TV P + + Sbjct: 22 AVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQPNRGSVVIDG---QTVTGPLKFV 78 Query: 102 AMVFQEATLMPWATVEQNVRLPLDLRHVPR-------AQADARVAASLKRVGLESFHAVL 154 M FQ TL+PW T NV LPL++ R A+ R + LK VGL+ + Sbjct: 79 GMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKQKKAEYTERALSLLKTVGLDGYADKF 138 Query: 155 PRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSRQDLTVVFV 214 P +LSGGMQ RASI RAL P +LL+DEPFGALD FTR +L LRD+W+ + V+ V Sbjct: 139 PWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRFNVILV 198 Query: 215 THSIYEAVFLSSRVIVMAARPGRVIA 240 TH + EA FL+ + VM+ RPGR++ Sbjct: 199 THDLREAAFLADTIYVMSKRPGRIVV 224 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.132 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 819,059 Number of extensions: 33357 Number of successful extensions: 475 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 319 Number of HSP's successfully gapped: 136 Length of query: 285 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 201 Effective length of database: 1,222,130 Effective search space: 245648130 Effective search space used: 245648130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)