BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0006.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309811|ref|YP_003773903.1| 1-acyl-sn-glycerol-3-phosphate ...   528   e-151
gi|300311697|ref|YP_003775789.1| acyltransferase family protein ...    57   1e-09

>gi|300309811|ref|YP_003773903.1| 1-acyl-sn-glycerol-3-phosphate
           acyltransferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 266

 Score =  528 bits (1360), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/266 (98%), Positives = 262/266 (98%), Gaps = 3/266 (1%)

Query: 1   MFVFRLLRLIAHLFKGMAVCAFLFPFTSQKGREAHIRRWSRKLLRICGIAIRIDSPLPIP 60
           MFVFRLLRLIAHLFKGMAVCAFLFPFTSQ+GREAHIRRWSRKLLRICGIAIRIDSPLPIP
Sbjct: 1   MFVFRLLRLIAHLFKGMAVCAFLFPFTSQQGREAHIRRWSRKLLRICGIAIRIDSPLPIP 60

Query: 61  RSLLVSNHVSWLDIFVVNSLQPCRFVAKSEIRSWPLIGWLCAKTGTIFISRGKASDVRRI 120
           RSLLVSNHVSWLDIF VNSLQPCRFVAKSEIRSWPLIGWLCAKTGTIFISRGKASDVRRI
Sbjct: 61  RSLLVSNHVSWLDIFAVNSLQPCRFVAKSEIRSWPLIGWLCAKTGTIFISRGKASDVRRI 120

Query: 121 FKGLVESIEKDEHVAFFPEGTTAAQGTLLPFHANLFEAAIDAKAPVQPYALRYVDANGQL 180
           FKGLVESIEKDEHVAFFPEGTTAAQGTLLPFHANLFEAAIDAKAPVQPYALRYVDANGQL
Sbjct: 121 FKGLVESIEKDEHVAFFPEGTTAAQGTLLPFHANLFEAAIDAKAPVQPYALRYVDANGQL 180

Query: 181 HAAADFIGEMSIAESILTILKARGMTAELKQLPLISTEGAHRRD---SAREVIATGLGYS 237
           HAAADFIGEMSIAESILTILKARGMTAELKQLPLISTEGAHRRD   SAREVIATGLGYS
Sbjct: 181 HAAADFIGEMSIAESILTILKARGMTAELKQLPLISTEGAHRRDLARSAREVIATGLGYS 240

Query: 238 LASLNPAGAPADTAPETAPDPQVAPH 263
           LASLNPAGAPADTAPETAPDPQVAPH
Sbjct: 241 LASLNPAGAPADTAPETAPDPQVAPH 266


>gi|300311697|ref|YP_003775789.1| acyltransferase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 932

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 10/151 (6%)

Query: 29  QKGREAHIRRWSRKLLRICGIAIRI--DSPLPIPRSLLVSNHVSWLDIFVVNSLQP---- 82
           Q  R AH    S+ L+R+  + + I     LP    +LV NH S+LD  ++ +  P    
Sbjct: 727 QGRRIAH--HGSQLLVRLLALQVSIAGTDHLPSGPHVLVVNHSSYLDSLILLAALPPVPG 784

Query: 83  -CRFVAKSEIRSWPLIGWLCAKTGTIFISRGKASDVRRIFKGLVESIEKDEHVAFFPEGT 141
            C   AK E+ +  +I       G +F+ R   S  R     +VE++++ E++  FPEGT
Sbjct: 785 YC-LAAKRELEAHWIIRRFLRGLGVLFVDRSDISQSRTEVDSMVEALKRGENILVFPEGT 843

Query: 142 TAAQGTLLPFHANLFEAAIDAKAPVQPYALR 172
                 L  FH   F AA  A  P+    LR
Sbjct: 844 FTRNAGLNAFHFGAFMAASKANVPLVVAGLR 874


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 726,695
Number of extensions: 27801
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 3
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)