BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0005.p
         (458 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspiril...   930   0.0  
gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase [Herb...   112   6e-26

>gi|300309813|ref|YP_003773905.1| phosphomannomutase [Herbaspirillum
           seropedicae SmR1]
          Length = 458

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/458 (99%), Positives = 457/458 (99%)

Query: 1   VTSLSPSIFKAYDIRGIIGKTLDGTVAYRIGQAFGAAALAKGQKKVVIGRDGRLSGPELA 60
           +TSLSPSIFKAYDIRGIIGKTLDGTVAYRIGQAFGAAALAKGQKKVVIGRDGRLSGPELA
Sbjct: 1   MTSLSPSIFKAYDIRGIIGKTLDGTVAYRIGQAFGAAALAKGQKKVVIGRDGRLSGPELA 60

Query: 61  AELARGLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEA 120
           AELARGLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEA
Sbjct: 61  AELARGLQAVGVDVIDLGMVATPMVYFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEA 120

Query: 121 IHGETIQALYHAIVKGDFPQGAGGYATHDIKAAYIERMLADVKLARPLKIAVDCGNGVAG 180
           IHGETIQALYHAIVKGDFPQGAGGYATHDIKAAYIERMLADVKLARPLKIAVDCGNGVAG
Sbjct: 121 IHGETIQALYHAIVKGDFPQGAGGYATHDIKAAYIERMLADVKLARPLKIAVDCGNGVAG 180

Query: 181 AFAGEIYRALGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCLRESDCELGLAFDGDG 240
           AFAGEIYR LGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCLRE+DCELGLAFDGDG
Sbjct: 181 AFAGEIYRTLGCEVTELFCEVDGTFPNHHPDPAHPENLQDLIRCLRETDCELGLAFDGDG 240

Query: 241 DRLGLVTKDGQIIYPDRQLMLFAEDVLTRHPGKEILYDVKCTRHLAPWITARGGRPLMWK 300
           DRLGLVTKDGQIIYPDRQLMLFAEDVLTRHPGKEILYDVKCTRHLAPWITARGGRPLMWK
Sbjct: 241 DRLGLVTKDGQIIYPDRQLMLFAEDVLTRHPGKEILYDVKCTRHLAPWITARGGRPLMWK 300

Query: 301 TGHSLVKAKLRETGAPLGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQADPSAVLNA 360
           TGHSLVKAKLRETGAPLGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQADPSAVLNA
Sbjct: 301 TGHSLVKAKLRETGAPLGGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQADPSAVLNA 360

Query: 361 LPQSVSTPELQLKLQEGENVALIGKLQGEASFEGAQEIIAIDGLRVEYPDGFGLARSSNT 420
           LPQSVSTPELQLKLQEGENVALIGKLQGEASFEGAQEIIAIDGLRVEYPDGFGLARSSNT
Sbjct: 361 LPQSVSTPELQLKLQEGENVALIGKLQGEASFEGAQEIIAIDGLRVEYPDGFGLARSSNT 420

Query: 421 TPVVVLRFEAETPEALARIQAQFRQAILAVRPEVALPF 458
           TPVVVLRFEAETPEALARIQAQFRQAILAVRPEVALPF
Sbjct: 421 TPVVVLRFEAETPEALARIQAQFRQAILAVRPEVALPF 458


>gi|300310717|ref|YP_003774809.1| phosphoglucosamine mutase
           [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score =  112 bits (280), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 187/429 (43%), Gaps = 31/429 (7%)

Query: 26  VAYRIGQAFGAAALAKGQKKVVIGRDGRLSGPELAAELARGLQAVGVDVIDLGMVATPMV 85
           + Y  G+    A     +  V+IG+D R+SG  L A L  G  A GVDV   G + TP V
Sbjct: 28  LGYAAGKVLAKAKDGMTRPTVLIGKDTRISGYMLEAALEAGFAAAGVDVWLAGPLPTPAV 87

Query: 86  YFGTHVLDTQSGIMVTGSHNPPDYNGFKMVLAGEAIHGETIQALYHAIVKGDF---PQGA 142
            + T  L   +G++++ SHNP   NG K   A      ++++A   A ++      P   
Sbjct: 88  AYLTRALRLSAGVVISASHNPYHDNGIKFFSASGNKLPDSVEADIEAALEQPMDCVPSEK 147

Query: 143 GGYATH--DIKAAYIE---RMLADVKLARPLKIAVDCGNGVAGAFAGEIYRALGCEVTEL 197
            G A    D    YIE       +    R +++ VDC +G A   A  ++  LG EV  +
Sbjct: 148 LGKARRLSDAPGRYIEFCKSTFPNAMNLRGMRLVVDCAHGAAYNIAPHVFHELGAEVITI 207

Query: 198 FCEVDGTFPNHHPDPAHPENLQDLIRCLRESDCELGLAFDGDGDRLGLVTKDGQIIYPDR 257
             + DG   N       P+    L+  +RE   +LG+A DGD DRL +V  +G+I   D 
Sbjct: 208 GNQPDGLNINEDCGATAPKT---LVASVREYRADLGIALDGDADRLIMVDGEGRIYNGDE 264

Query: 258 QLMLFAEDVLTRHPGKEILYDVKCTRHLAPWITARGGRPLMWKTGHSLVKAKLRETGAPL 317
            L L  +D L   P    +  +     L       G      K G   V   L+E G  L
Sbjct: 265 LLYLMVKDRLATGPVHGAVGTLMTNMALEVAFKKMGVPFERAKVGDRYVLEVLQEKGWVL 324

Query: 318 GGEMSGHIFFKDRWFGFDDGLYAGVRMLELMARQ----ADPSAVLNALPQSVSTPELQLK 373
           GGE SGH+   D+     DG+ + +++L  + R     A+ ++ ++  PQS+   ++   
Sbjct: 325 GGEGSGHLLALDK-HTTGDGIVSALQVLSALKRSGKTLAELTSDISMYPQSLVNVKIPAG 383

Query: 374 LQEGENVALIGKLQGEASFEGAQEIIAIDGLRVEYPDGFGLARSSNTTPVVVLRFEAETP 433
                N AL      +A     +E +   G RV       L R S T P++ +  EA+  
Sbjct: 384 YDWKSNTAL------QAEKAAVEEELGERG-RV-------LLRPSGTEPLIRVMVEAQQA 429

Query: 434 EALARIQAQ 442
           + LAR  AQ
Sbjct: 430 D-LARSMAQ 437


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,614,477
Number of extensions: 75951
Number of successful extensions: 247
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,203,190
Effective search space: 445180300
Effective search space used: 445180300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)