BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0002.p
         (428 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309816|ref|YP_003773908.1| 3-deoxy-d-manno-octulosonic-aci...   849   0.0  

>gi|300309816|ref|YP_003773908.1| 3-deoxy-d-manno-octulosonic-acid
           (KDO) transferase [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/428 (98%), Positives = 427/428 (99%)

Query: 1   MRWLYSALWWFAMPLVLLRLWRRGRQEPGYRAHVAERLGFYPRLPDPQARFIWVHAVSVG 60
           MRWLYSALWWFAMPLVLLRLWRRGRQEPGYRAHVAERLGFYPRLPDPQARFIWVHAVSVG
Sbjct: 1   MRWLYSALWWFAMPLVLLRLWRRGRQEPGYRAHVAERLGFYPRLPDPQARFIWVHAVSVG 60

Query: 61  ETRAAEPLVDALLSRYPDCKILLTCMTATGRATGAQVFGKHGARVVQSFLPYDTGWMCSR 120
           ETRAAEPLVDALLSRYPDCKILLTCMTATGRATGAQVFGKHGARVVQSFLPYDTGWMCSR
Sbjct: 61  ETRAAEPLVDALLSRYPDCKILLTCMTATGRATGAQVFGKHGARVVQSFLPYDTGWMCSR 120

Query: 121 FLRHFRPLACILMETEVWPNLIRQCRRHDVPVMLANARLSERSLRRGQRFASLLRPAAEA 180
           FLRHFRPLACILMETEVWPNLIRQCRRHDVPVMLANARLSERSLRRGQRFASLLRPAAEA
Sbjct: 121 FLRHFRPLACILMETEVWPNLIRQCRRHDVPVMLANARLSERSLRRGQRFASLLRPAAEA 180

Query: 181 IDVVGAQSDGDAQRLLAFGARHVEVTGSLKFDVQPPMQVVERGREWKRSLGERKVLLCAS 240
           IDVVGAQSDGDA+RLLAFGARHVEVTGSLKFDVQPPMQVVERGREWKR+LGERKVLLCAS
Sbjct: 181 IDVVGAQSDGDARRLLAFGARHVEVTGSLKFDVQPPMQVVERGREWKRALGERKVLLCAS 240

Query: 241 TREGEEVLILDALAKLGQPDWLTVIVPRHPQRFDEVAALIRARGLRLRRRSELAQGFAVE 300
           TREGEEVLILDALAKLG+PDWLTVIVPRHPQRFDEVAALIRARGLRLRRRSELAQ FAVE
Sbjct: 241 TREGEEVLILDALAKLGRPDWLTVIVPRHPQRFDEVAALIRARGLRLRRRSELAQDFAVE 300

Query: 301 DVDVVLGDSMGEMFAYYALSDVSFIGGSLLPLGGQNLIEALALGKPVLMGEHTFNFLRIT 360
           DVDVVLGDSMGEMFAYYALSDVSFIGGSLLPLGGQNLIEALALGKPVL+GEHTFNFLRIT
Sbjct: 301 DVDVVLGDSMGEMFAYYALSDVSFIGGSLLPLGGQNLIEALALGKPVLIGEHTFNFLRIT 360

Query: 361 EEAVADGAAVRVGDAVELLRQWSILIAEPDRIDEMAQAALSFAQRHQGATDRSLVLLAPL 420
           EEAVADGAAVRVGDAVELLRQWSILIAEPDRIDEMAQAALSFAQRHQGATDRSLVLLAPL
Sbjct: 361 EEAVADGAAVRVGDAVELLRQWSILIAEPDRIDEMAQAALSFAQRHQGATDRSLVLLAPL 420

Query: 421 LERAHARR 428
           LERAHARR
Sbjct: 421 LERAHARR 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,330,009
Number of extensions: 52153
Number of successful extensions: 252
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,203,190
Effective search space: 409084600
Effective search space used: 409084600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)