BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0001.p (560 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311664|ref|YP_003775756.1| siderophore (cyclic peptide) AB... 1139 0.0 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 84 2e-17 gi|300311045|ref|YP_003775137.1| proline/glycine betaine ABC tra... 79 7e-16 gi|300313433|ref|YP_003777525.1| cell division ATPase [Herbaspir... 77 3e-15 gi|300311701|ref|YP_003775793.1| export system ATP-binding subun... 77 5e-15 >gi|300311664|ref|YP_003775756.1| siderophore (cyclic peptide) ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 560 Score = 1139 bits (2946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/560 (99%), Positives = 560/560 (100%) Query: 1 VFKELIRQSRGLLAAATAASVARGVCSILMVTQITATLAATQAPGWQSTAALHFALTVLA 60 +FKELIRQSRGLLAAATAASVARGVCSILMVTQITATLAATQAPGWQSTAALHFALTVLA Sbjct: 1 MFKELIRQSRGLLAAATAASVARGVCSILMVTQITATLAATQAPGWQSTAALHFALTVLA 60 Query: 61 LWLAHMTCNILFERLAHGVHAQSRRFICERVLHADYARLEQVGAPAIQAALTEHSTNVST 120 LWLAHMTCNILFERLAHGVHAQSRRFICERVLHADYARLEQVGAPAIQAALTEHSTNVST Sbjct: 61 LWLAHMTCNILFERLAHGVHAQSRRFICERVLHADYARLEQVGAPAIQAALTEHSTNVST 120 Query: 121 FFVSFPAILTNAIVVSGCMIYMATLSAQVFACAVLVIGLGAAGYHLAHLRAIRHLRQASG 180 FFVSFPAILTNAIVVSGCMIYMATLSAQVFACAVLVIGLGAAGYHLAHLRAIRHLRQASG Sbjct: 121 FFVSFPAILTNAIVVSGCMIYMATLSAQVFACAVLVIGLGAAGYHLAHLRAIRHLRQASG 180 Query: 181 EQDRLFSHFRSMLDGAKELRLNGKKRRLFGREVLGQSIDRVRHERSLGMAIFVAATSWGN 240 EQDRLFSHFRSMLDGAKELRLNG+KRRLFGREVLGQSIDRVRHERSLGMAIFVAATSWGN Sbjct: 181 EQDRLFSHFRSMLDGAKELRLNGRKRRLFGREVLGQSIDRVRHERSLGMAIFVAATSWGN 240 Query: 241 FLIYAFIGLVLFVLVGDVPDRNRILTGYAVLFIYMITPLEILLMNAPRANLAKVSARRID 300 FLIYAFIGLVLFVLVGDVPDRNRILTGYAVLFIYMITPLEILLMNAPRANLAKVSARRID Sbjct: 241 FLIYAFIGLVLFVLVGDVPDRNRILTGYAVLFIYMITPLEILLMNAPRANLAKVSARRID 300 Query: 301 EVVQALDNGRPRAPAAALPQQHQPHQPAPELQRLQLSGVLHRYYHEQHDEFFTMGPIDLA 360 EVVQALDNGRPRAPAAALPQQHQPHQPAPELQRLQLSGVLHRYYHEQHDEFFTMGPIDLA Sbjct: 301 EVVQALDNGRPRAPAAALPQQHQPHQPAPELQRLQLSGVLHRYYHEQHDEFFTMGPIDLA 360 Query: 361 FAPGEVVFLVGGNGSGKTTLAKLLAGLYRPGEGHILLNGRPVSWQPDVEGEGEARVPDEQ 420 FAPGEVVFLVGGNGSGKTTLAKLLAGLYRPGEGHILLNGRPVSWQPDVEGEGEARVPDEQ Sbjct: 361 FAPGEVVFLVGGNGSGKTTLAKLLAGLYRPGEGHILLNGRPVSWQPDVEGEGEARVPDEQ 420 Query: 421 YRQLFATVFSDFHLFESLLETGGAELDARGNELLAKLYLHHKVQIRDGAFTTRALSMGQR 480 YRQLFATVFSDFHLFESLLETGGAELDARGNELLAKLYLHHKVQIRDGAFTTRALSMGQR Sbjct: 421 YRQLFATVFSDFHLFESLLETGGAELDARGNELLAKLYLHHKVQIRDGAFTTRALSMGQR 480 Query: 481 KRLALVVAVLEDRPFFIFDEWAADQDPVFKKVFYHEVLGQLRAAGKTVLVISHDDQYFHL 540 KRLALVVAVLEDRPFFIFDEWAADQDPVFKKVFYHEVLGQLRAAGKTVLVISHDDQYFHL Sbjct: 481 KRLALVVAVLEDRPFFIFDEWAADQDPVFKKVFYHEVLGQLRAAGKTVLVISHDDQYFHL 540 Query: 541 ADRMVRMDNGRVVFDGRWEG 560 ADRMVRMDNGRVVFDGRWEG Sbjct: 541 ADRMVRMDNGRVVFDGRWEG 560 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 26/238 (10%) Query: 334 LQLSGVLHRYYHEQHDEFFTMGPIDLAFAPGEVVFLVGGNGSGKTTLAKLLAGLYRPGEG 393 LQL G L R + ++ + ++L GE+V +VG +GSGK+TL +L L +P G Sbjct: 6 LQLRG-LRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAG 64 Query: 394 HILLNGRPVSWQPDVEGEGEARVPDEQYRQLFATVFSDFHLFESLLETGGAELDA----- 448 L+ GR G+ +A + R+ F +F +HL L T E+ + Sbjct: 65 SYLVAGRET-------GKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGL 117 Query: 449 -------RGNELLAKLYLHHKVQIRDGAFTTRALSMGQRKRLALVVAVLEDRPFFIFDEW 501 R ELLA+L L + + G LS GQ++R+++ A++ + DE Sbjct: 118 EPLQRRQRAGELLARLGLAERSHHKPG-----QLSGGQQQRVSIARALMNGGDVILADEP 172 Query: 502 AADQDPVFKKVFYHEVLGQLRAAGKTVLVISHDDQYFHLADRMVRMDNGRVVFDGRWE 559 D + ++L +L A G T+++++HD Q A R++ + +G ++ D R E Sbjct: 173 TGALDSHSGQEVI-KILKELHAEGHTIIIVTHDMQVASHAQRIIEIKDGVIIADRRNE 229 >gi|300311045|ref|YP_003775137.1| proline/glycine betaine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 8/218 (3%) Query: 343 YYHEQHDEFFTMGPIDLAFAPGEVVFLVGGNGSGKTTLAKLLAGLYRPGEGHILLNGRPV 402 Y + + + + L A GE+ +G +G GKTT K++ L P G +LLNG+ Sbjct: 11 YTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSGRVLLNGQDT 70 Query: 403 SWQPDVEGEGEARVPDEQYRQLFA--TVFSDFHLFESLLETGGAELDARGNELLAKLYLH 460 S +VE +Q LF T+ + + LL R EL+A + L Sbjct: 71 SGIDEVELRRHIGYVIQQI-GLFPNMTIEENITIVPRLLGWDKKRCQERATELMAMVALD 129 Query: 461 HKVQIRDGAFTTRALSMGQRKRLALVVAVLEDRPFFIFDEWAADQDPVFKKVFYHEVLGQ 520 K ++ R LS GQ++R+ ++ A+ D P + DE DP+ ++ +E Sbjct: 130 PKKFLK---RYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQM 186 Query: 521 LRAAGKTVLVISHD-DQYFHLADRMVRMDNGRVV-FDG 556 R KTV+++SHD D+ L D++ G++V FD Sbjct: 187 QRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDN 224 >gi|300313433|ref|YP_003777525.1| cell division ATPase [Herbaspirillum seropedicae SmR1] Length = 230 Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 113/232 (48%), Gaps = 34/232 (14%) Query: 342 RYYHEQHDEFFTMGPIDLAFAPGEVVFLVGGNGSGKTTLAKLLAGLYRPGEGHILLNGRP 401 R + E + + I L+ GE++FL G +G+GK+TL K++A + RP G + +NG Sbjct: 6 RVSKQYAREVYALRDITLSVRKGELIFLAGPSGAGKSTLLKMIAAIERPTAGKLAVNG-- 63 Query: 402 VSWQPDVEGEGEARVPDEQYRQLFATVFS------DFHLFES----LLETGGAELDA--R 449 D+ G + +P R+ +F D +L + L+ TG + DA R Sbjct: 64 ----TDIGGLKASGLP--YLRRNLGLIFQQQKLLLDRNLLSNVMLPLIVTGSSRQDAERR 117 Query: 450 GNELLAKLYLHHKVQIRDGAFTTRALSMGQRKRLALVVAVLEDRPFFIFDEWAADQDPVF 509 L K+ L K LS G+++R+A+ A++ + DE A+ D Sbjct: 118 ARAALDKVDLLGKAMCE-----PMELSGGEQQRVAIARAIVNRPQIILADEPTANLD--- 169 Query: 510 KKVFYHEVLGQLRA---AGKTVLVISHDDQYFHLADRMVRMDNGRVVFDGRW 558 + ++VL L++ G T L+ +HD+Q+ ADR++ +D GR+V DG W Sbjct: 170 -RANANKVLAALKSFHGVGVTCLISTHDEQFLTGADRIIYLDRGRIV-DG-W 218 >gi|300311701|ref|YP_003775793.1| export system ATP-binding subunit [Herbaspirillum seropedicae SmR1] Length = 240 Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 22/224 (9%) Query: 340 LHRYYHEQHDEFFTMGPIDLAFAPGEVVFLVGGNGSGKTTLAKLLAGLYRPGEGHILLNG 399 L +Y+ + + + L+ A GE++F+VG +GSGKTT +++G+ RP G + +NG Sbjct: 20 LVKYFGQGNARVLAIDHACLSAAFGEILFIVGPSGSGKTTFLSIISGILRPDGGVVRVNG 79 Query: 400 RPVSWQPDVEGEGEARVPDEQYRQL----FATVFSDFHLFESLLETGGA-------ELDA 448 + W +P++Q VF D+HLF L +D Sbjct: 80 VDL-WN----------LPEDQLADFRLNTIGFVFQDYHLFPRLTSAENVAIPLILKNVDW 128 Query: 449 RGNELLAKLYLHHKVQIRDGAFTTRALSMGQRKRLALVVAVLEDRPFFIFDEWAADQDPV 508 + A ++L G LS G+++R+A+ A++ P I DE A D Sbjct: 129 KSALASANMFLDVVGLKGCGDVFPLKLSGGEQQRVAIARAIVSSPPILILDEPTASLDGD 188 Query: 509 FKKVFYHEVLGQLRAAGKTVLVISHDDQYFHLADRMVRMDNGRV 552 ++ + ++ + +L+++HD + ADR+V M +G+V Sbjct: 189 TGRMIIAFLREKILNPRRCILIVTHDPRISEFADRIVHMADGKV 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.139 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,634,608 Number of extensions: 69280 Number of successful extensions: 649 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 615 Number of HSP's successfully gapped: 64 Length of query: 560 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 470 Effective length of database: 1,193,720 Effective search space: 561048400 Effective search space used: 561048400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)