BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0112.p (603 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor prote... 1202 0.0 gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane i... 655 0.0 gi|300313664|ref|YP_003777756.1| tonB-dependent receptor for iro... 270 2e-73 gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 176 4e-45 gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore rece... 158 1e-39 >gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 755 Score = 1202 bits (3111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 590/602 (98%), Positives = 593/602 (98%) Query: 1 MSFIKSRKHASPAHAARLPSLAVASALLLPVMGAHAQTSGSGLPPTRVDGARESPYKSEY 60 MSFIKSRKHASPAHAARLPSLAVASALLLPVMGAHAQTSGSGLPPTRVDGARESPYKSEY Sbjct: 1 MSFIKSRKHASPAHAARLPSLAVASALLLPVMGAHAQTSGSGLPPTRVDGARESPYKSEY 60 Query: 61 SASPKYTQPLVDTPQTLQILRRPLMAQQAATSLSDVLRNTPGVGAFFLGENGSTSTGDTI 120 SASPKYTQPLVDTPQTLQILRRPLMAQQAATSLSDVLRNTPGVGAFFLGENGSTSTGDTI Sbjct: 61 SASPKYTQPLVDTPQTLQILRRPLMAQQAATSLSDVLRNTPGVGAFFLGENGSTSTGDTI 120 Query: 121 YMRGFDATGVIFVDNVRDLGAISRDVFNIEQVEVLKGQAGTDNGRGSPTGSINLVTKQPE 180 YMRGFDATGVIFVDNVRDLGAISRDVFNIEQVEVLKGQAGTDNGRGSPTGSINLVTKQPE Sbjct: 121 YMRGFDATGVIFVDNVRDLGAISRDVFNIEQVEVLKGQAGTDNGRGSPTGSINLVTKQPE 180 Query: 181 LVDAVTVSATYGSWNQKRATLDWNRILDADRGLALRLNLMKQHSGVPGRHVVHNARDGFA 240 LVDAVTVSATYGSW QKRATLDWNRILDADRGLALRLNLMKQHSGVPGRHVVHNARDGFA Sbjct: 181 LVDAVTVSATYGSWIQKRATLDWNRILDADRGLALRLNLMKQHSGVPGRHVVHNARDGFA 240 Query: 241 PSLAFGLNTPTRIFFNYLHIQQDNVPDGGVSTIGLPGYSTPDPNRPYISNAPKVSTSNFY 300 PSLAFGLNTPTRIFFNYLHIQQDNVPDGGVSTIGLPGYSTPDPNRPYISNAPKVSTSNFY Sbjct: 241 PSLAFGLNTPTRIFFNYLHIQQDNVPDGGVSTIGLPGYSTPDPNRPYISNAPKVSTSNFY 300 Query: 301 GHVNDYNRVNTDMTTLRVEHDFSPDLKLQNTTRYARTDQDYRLSSFVAIGVQTNRSSVSL 360 GHVNDYNRVNTDMTTLRVEHDFSPDLKLQNTTRYARTDQDYRLSSFVAIGV+T+RSSVSL Sbjct: 301 GHVNDYNRVNTDMTTLRVEHDFSPDLKLQNTTRYARTDQDYRLSSFVAIGVKTDRSSVSL 360 Query: 361 FTPSPEDRSTWEVSRNIITRRDQSNEILSNQTHLTASFQSGALQHTLVGGLELTREQQHA 420 FTPSPEDRSTWEVSRNIITRRDQSNEILSNQTHLTASFQSGALQHTLVGGLELTRE+QHA Sbjct: 361 FTPSPEDRSTWEVSRNIITRRDQSNEILSNQTHLTASFQSGALQHTLVGGLELTRERQHA 420 Query: 421 LSFTGPSRRPRANLYQPNPEFDDSGTLISVNGRNKGQTDTVSLYALDTLKFNERWSLSLG 480 LSFTGPSRRPRANLYQPNPEFDDSGTLISVNGRNKGQTDTVSLYALDTLKFNERWSLSLG Sbjct: 421 LSFTGPSRRPRANLYQPNPEFDDSGTLISVNGRNKGQTDTVSLYALDTLKFNERWSLSLG 480 Query: 481 LREDFYRTSFDDTKPNAGGPLHKSGGLFNAKVAVVFKPTSYSSLYALYASAQQPPGGANF 540 LREDFYRTSFDDTKPNAGGPLHKSGGLFNAKVAVVFKPTSYSSLYALYASAQQPPGGANF Sbjct: 481 LREDFYRTSFDDTKPNAGGPLHKSGGLFNAKVAVVFKPTSYSSLYALYASAQQPPGGANF 540 Query: 541 NLSASRSNASHTDYAAQKTDTGEIGTKWELLDRKLIATAALYRTEVNNEVELDGPYNVRT 600 NLSASRSNASHTDYA QKTDTGEIGTKWELLDRKLIATAALYRTEVNNEVELD N Sbjct: 541 NLSASRSNASHTDYAPQKTDTGEIGTKWELLDRKLIATAALYRTEVNNEVELDSLTNTYF 600 Query: 601 QC 602 Q Sbjct: 601 QT 602 >gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane iron monomeric catechols receptor protein [Herbaspirillum seropedicae SmR1] Length = 799 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/621 (56%), Positives = 448/621 (72%), Gaps = 37/621 (5%) Query: 1 MSFIKSRKHASPAHAARLPSL----AVASALLLPVMGAHAQTSGSGLPPTRVDGARESPY 56 M++IKSRKHA AA L S AVASALLLP +GA AQ++ + LP V ++E Y Sbjct: 26 MTYIKSRKHAPSTRAASLASTSLSAAVASALLLPAIGAQAQSANAALPSVEVTASQEPAY 85 Query: 57 KSEYSASPKYTQPLVDTPQTLQILRRPLMAQQAATSLSDVLRNTPGVGAFFLGENGSTST 116 K++ ++S KYTQPLVDTPQTL +++R L+ QQ AT+L++ LRN+PGVG F LGENG+T+T Sbjct: 86 KADKASSAKYTQPLVDTPQTLTVIKRQLIDQQGATTLTEALRNSPGVGTFSLGENGATNT 145 Query: 117 GDTIYMRGFDATGVIFVDNVRDLGAISRDVFNIEQVEVLKGQAGTDNGRGSPTGSINLVT 176 GD IYMRGFD++ IFVD+VRDLG++SRD+FNI+QVEVLKG AGTD GRGSPTGSINLVT Sbjct: 146 GDAIYMRGFDSSSAIFVDSVRDLGSVSRDMFNIQQVEVLKGPAGTDTGRGSPTGSINLVT 205 Query: 177 KQPELVDAVTVSATYGSWNQKRATLDWNRILDADRGLALRLNLMKQHSGVPGRHVVHNAR 236 KQ E DA + SA YGSWNQKR T DWN++L+A+ G A+RLNLMKQ SGVPGRH V N R Sbjct: 206 KQAETTDAFSASAMYGSWNQKRVTADWNKVLNAETGTAMRLNLMKQDSGVPGRHEVKNDR 265 Query: 237 DGFAPSLAFGLNTPTRIFFNYLHIQQDNVPDGGVSTIGLPGYSTPDPNRPYISNAPKVST 296 G A SLA GL + TR+F +YLH++QD+VPDGGV TIGLPGY+TPD R ++S+A +V + Sbjct: 266 TGLALSLAHGLGSDTRVFLDYLHMEQDDVPDGGVPTIGLPGYTTPDATRRFLSSAGRVDS 325 Query: 297 SNFYGHVNDYNRVNTDMTTLRVEHDFSPDLKLQNTTRYARTDQDYRLSSFVAIGVQTNRS 356 SNFYG +DYN+VNTD TLRVEHDFSPDLKLQNTTR +T Q+Y L++F+A S Sbjct: 326 SNFYGLTSDYNQVNTDRLTLRVEHDFSPDLKLQNTTRIGKTHQNYLLTAFMA-------S 378 Query: 357 SVSLFTPSPEDRSTWEVSRNIITRRDQSNEILSNQTHLTASFQSGALQHTLVGGLELTRE 416 S +L TP+ D S+W ++R++ T ++Q+N I++NQT+LTA +SG+L+HTL+GG+ELT+E Sbjct: 379 SANLLTPNANDASSWTLARSLPTIKNQTNTIITNQTYLTAKLKSGSLEHTLMGGVELTQE 438 Query: 417 QQHALSFTGPSRRPRANLYQPNPEFDDS-GTLI-----SVNGRNKGQTDTVSLYALDTLK 470 +Q+ P NLY PNP + G I S N G+TDTVS Y DT+K Sbjct: 439 RQNNSGVLTSGTLPAVNLYNPNPNPNAGRGNWIMGADPSTNAW--GKTDTVSAYLFDTIK 496 Query: 471 FNERWSLSLGLREDFYRTSFDD--------------TKPNAGGPLHK----SGGLFNAKV 512 N++WS + G+R D Y TS + T AG + SG L N K+ Sbjct: 497 VNQQWSFNGGVRVDHYDTSLANGYRCVSSGRGTLCPTGVAAGTAFRQSFSTSGNLLNWKL 556 Query: 513 AVVFKPTSYSSLYALYASAQQPPGGANFNLSASRSNASHTDYAAQKTDTGEIGTKWELLD 572 A ++KPT YSSLYALYA++QQPPGG++F+LSAS S+A + + QK T E+GTKW+LL+ Sbjct: 557 AGIYKPTDYSSLYALYATSQQPPGGSSFSLSASNSSADNPKFDPQKAKTAELGTKWDLLN 616 Query: 573 RKLIATAALYRTEVNNEVELD 593 +KL TAALYRTE+ NEVE D Sbjct: 617 KKLALTAALYRTEITNEVEQD 637 >gi|300313664|ref|YP_003777756.1| tonB-dependent receptor for iron transport protein [Herbaspirillum seropedicae SmR1] Length = 798 Score = 270 bits (690), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 198/577 (34%), Positives = 280/577 (48%), Gaps = 48/577 (8%) Query: 41 SGLPPTRVDGARESP-YKSEYSASPKYTQPLVDTPQTLQILRRPLMAQQAATSLSDVLRN 99 SGL V RE+P YK++ +SPK+TQPL+D PQ++ ++ + ++ QQ A +L D+L+N Sbjct: 59 SGLKEVVVTAPREAPEYKAQAVSSPKFTQPLLDLPQSITVVPKEVLTQQNAQNLQDILKN 118 Query: 100 TPGVGAFFLGENGSTSTGDTIYMRGFDATGVIFVDNVRDLGAISR-DVFNIEQVEVLKGQ 158 PG+ F GE G+ GD +RGF + + VD VRD G SR D FN+EQVEV KG Sbjct: 119 VPGI-TFTSGE-GNLGWGDMFTIRGFSSEQSLTVDGVRDAGMSSRNDTFNLEQVEVFKGT 176 Query: 159 AGTDNGRGSPTGSINLVTKQPELVDAVTVSATYGSWNQKRATLDWNRILDADRGLALRLN 218 ++G + GS+NLV+K+ L D S GS R T D N LDA ALRLN Sbjct: 177 GSIESGVSAIGGSVNLVSKEARLDDFYNTSFGVGSAGYTRFTADLNHQLDATS--ALRLN 234 Query: 219 LMKQHSGVPGRHVVHNARDGFAPSLAFGLNTPTRIFFNYLHIQQDNVPDGGVSTIGLPGY 278 LMKQ + V R VV R G A SL GL T TRIFF+ H DN+PD G+ Sbjct: 235 LMKQQNHVAERDVVKYDRQGIAASLGLGLGTRTRIFFDVFHQDDDNIPDTGL-------- 286 Query: 279 STPDPNRPYISNAPKVSTSNFYGHVNDYNRVNTDMTTLRVEHDFSPDLKLQNTTRYARTD 338 P S P VS + +YG + TD T RVEHDFS +K++N TR+ R D Sbjct: 287 --PIQRGTGGSVMPYVSRNAWYGSTTYTQQTTTDALTARVEHDFSDAVKIRNQTRWERAD 344 Query: 339 QDYRLS------------------SFVAIGVQTNRSSVSLFTPSPEDRSTWEVSRNIITR 380 LS + G T S + ++ + + V R Sbjct: 345 NLSVLSPARFNAANSAGASLGTSLGYAGSGSLTAASGILSYSDFTNTANRYGVLRGNDFG 404 Query: 381 RDQSNEILSNQTHLTASFQSGALQHTLVGGLELTREQQHALSFTGPSRRPRANLYQPNPE 440 + IL NQ+ L+ F +GA++H L G++L RE L T + NP Sbjct: 405 TSKRYTILDNQSDLSLKFDTGAIRHELSTGVDLYRETYGDLPRTVATPSGALGFDMSNPT 464 Query: 441 FDDSGTLISVNGRN-KGQTDTVSLYALDTLKFNERWSLSLGLREDFYRTSFDDTKPNAGG 499 + G + + LY DT+KF+ +W LR D ++ T Sbjct: 465 VSSASVATLKGGAGLESRVTNAGLYVADTMKFSPQWQFLTALRYDRWKAV---TSTRGAT 521 Query: 500 PLHKSGGLFNAKVAVVFKPTSYSSLYALYASAQQPPGGANFNLSASRSNASH-----TDY 554 S G + ++ +V+KP +SLY YA A QP L A+ +NA + + Y Sbjct: 522 TASSSAGALSGRLGLVYKPLENASLYLTYARAAQPSA-----LGATTNNAIYGSASASAY 576 Query: 555 AAQKTDTGEIGTKWELLDRKLIATAALYRTEVNNEVE 591 + T E+G KW++L+++L T A++RTEV + E Sbjct: 577 SPAVAKTRELGGKWDVLNKRLALTGAVFRTEVTDSWE 613 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 176 bits (447), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 173/587 (29%), Positives = 268/587 (45%), Gaps = 70/587 (11%) Query: 17 RLPSLAVASALLLPVMGAHAQTSGSGLPPTRVDGARESP-YKSEYSAS-PKYTQPLVDTP 74 RL LA S L ++ A AQ + LP V GAR + Y + + S K PL D P Sbjct: 9 RLAVLATCSLSPLAILPACAQQDTTALPAIEVSGARANDGYVAPTAVSGTKSEAPLRDVP 68 Query: 75 QTLQILRRPLMAQQAATSLSDVLRNTPGVGAFFLGENGSTSTG--DTIYMRGFDATGVIF 132 QT+ ++ ++ Q A+SL DVL+N PG+G ST G D +++RGF A G F Sbjct: 69 QTINVVPAQVIRDQNASSLQDVLKNVPGLGL-------STGDGQRDQVFIRGFTAIGDQF 121 Query: 133 VDNVRDLGAISRDVFNIEQVEVLKGQAGTDNGRGSPTGSINLVTKQPELVDAVTVSATYG 192 VD RD RD+ N+E VEV+KG A GRGS G IN VTK+P VD VS T Sbjct: 122 VDGFRDDALYFRDLSNVESVEVIKGPAAVLYGRGSSGGLINRVTKKPG-VDVSDVSFTAN 180 Query: 193 SWNQKRATLDWNRILDADRGLALRLNLMKQHSGVPGRHVVHNARDGFAPSLAFGLNTPTR 252 S +RA LD R + L+ RL + G R R APS+A + T+ Sbjct: 181 STAGRRAELDLGRA--GEGALSWRLTGAVER-GDSFRAQQFIDRTAIAPSVALRFSADTK 237 Query: 253 IFFNYLHIQQDNVPDGGVSTIGLPGYSTPDPNRPYISNAPKVSTSNFYGHVN----DYNR 308 + +Q D + D + G+P Y RP V YG N D+ + Sbjct: 238 LL-----LQMDYLEDRRMMDFGIPSYR----GRPV-----DVDPGTTYGARNARDADFVQ 283 Query: 309 VNTDMTTLRVEHDFSPDLKLQNTTRYARTDQDYRLSSFVAIGVQTNRSSVSLFTPSPEDR 368 TT H F+ + +N RY DY L+ G N ++ + Sbjct: 284 SRVASTTATFTHRFNDEFSFRNGLRY----YDYHLNRNNTNGGTVNEATAT--------- 330 Query: 369 STWEVSRNIITRRDQSNEILSNQTHLTASFQSGALQHTLVGGLELTREQQHALSFTGPSR 428 +T ++ + RD++ NQ+ LT Q G+++H ++ GLEL + + A +G Sbjct: 331 TTLNHAKLV---RDENGWF--NQSELTQKLQLGSIRHEILYGLELGSQSKDASQASGVVN 385 Query: 429 RPRANLYQP-----NPEFDDSGTLISVNGRNKGQTDTVSLYALDTLKFNERWSLSLGLRE 483 P +++ P +P + TL G DT + Y D+L +E+W +GLR Sbjct: 386 FPGVSIFNPVLPVVDPNRLNPPTL------TYGTYDTFATYLQDSLSLSEQWKALVGLRY 439 Query: 484 DFYR--TSFDDTKPNAGGPLHKSGGLFNAKVAVVFKPTSYSSLYALYASAQQPPGGANFN 541 D YR + + + L ++ + + +V++P+ S Y ++ + Q P G +F Sbjct: 440 DRYRQQSRILNLANGSTADLQRTDTAVSPRAGLVWQPSLTQSYYLSWSRSFQ-PSGESFA 498 Query: 542 LSASRSNASHTDYAAQKTDTGEIGTKWELLDRKLIATAALYRTEVNN 588 L+ ++ D A ++T E G K++ + + AT +++R E +N Sbjct: 499 LA-----TNNADLAPEQTRNTEAGAKYDFWEGRASATVSVFRLERDN 540 >gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 158 bits (399), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 155/562 (27%), Positives = 239/562 (42%), Gaps = 43/562 (7%) Query: 43 LPPTRVDGARESPYKSEYSASPKYTQPLVDTPQTLQILRRPLMAQQAATSLSDVLRNTPG 102 L P V G R+ + S +A K L D PQ++ ++ + M Q A+SLSD LRN G Sbjct: 42 LAPVTVQGQRDD-FASTGTALTKLPADLRDVPQSVTVVNKAQMQSQGASSLSDALRNVSG 100 Query: 103 VGAFFLGENGSTSTGDTIYMRGFDATGVIFVDNVRDLGAISRDVFNIEQVEVLKGQAGTD 162 + LG G+ I + GF A I++D RD G RD F I++VEVL G + Sbjct: 101 I---TLGGAEGGQIGNNINLNGFSARTDIYLDGFRDRGQYYRDTFAIDEVEVLMGPSSML 157 Query: 163 NGRGSPTGSINLVTKQPELVDAVTVSATYGSWNQKRATLDWNRILDADRGLALRLNLMKQ 222 GRGS G IN V+K+ L A +S + + R+T+D NR L ALR+ M Q Sbjct: 158 FGRGSTGGIINQVSKKANLKAATEISGSITTNGLVRSTVDVNRPLSDTS--ALRIEAMAQ 215 Query: 223 HSGVPGRHVVHNARDGFAPSLAFGLNTPTRIFFNYLHIQQDNVPDGGVSTIGLPGYSTPD 282 + R G A S +G+ TPT I + L + PD GLP Sbjct: 216 NGAASTRKQTDVQDFGLAGSYVWGIGTPTEITLSALLQHNQDQPD-----YGLP------ 264 Query: 283 PNRPYISNAPKVSTSNFYGHVNDYNRVNTDMTTLRVEHDFSPDLKLQNTTRYARTDQDYR 342 P + V YG +D + + V+H +PD+ L+N T++ D Sbjct: 265 ---PLNGHPANVGRDTAYGLNSDRTIQDVASFNVGVKHKIAPDVTLRNQTQFNYVHTDAV 321 Query: 343 LSSFVAIGVQTNRSSVSLFTPSPEDRSTWEVSRNIITRRDQSNEILSNQTHLTASFQSGA 402 ++ IG + L S + R R ++ + NQT LTA F +G+ Sbjct: 322 ETAPNTIGTVSGAGFTQLVNASSNLPLSSLFVRGQSHDRVITDYSIFNQTELTAKFATGS 381 Query: 403 LQHTLVGGLELTRE----QQHALSFTGPSRRPRAN-----------LYQPNPEFDDSGTL 447 ++H V G+E+ + Q + + + AN L P+ S Sbjct: 382 IKHDAVVGVEVGHDGYDNQNYYRNGSCNGTALNANGATTGYVDCVPLLNPSYSAAGSSVS 441 Query: 448 ISVNGRNKGQTDTVSLYALDTLKFNERWSLSLGLREDFYRTSFDDTKPNAGGPLHKSGGL 507 S R G +TV+ Y DT++ ++ L GLR D Y S ++ +A P S + Sbjct: 442 SSTGNRAGGSANTVAAYVGDTVELVPQFKLVGGLRYDRYIASITNSIASARTPAAASQTI 501 Query: 508 --FNAKVAVVFKPTSYSSLYALYASAQQPPGGANFNLSASRSNASHTDYAAQKTDTGEIG 565 + + +++PTS + Y Y ++ P +L + +K + E+G Sbjct: 502 NFLSLRSGAIWQPTSAQAYYVSYGTSFNP------SLEQLTGTQGQQNLDPEKNRSYELG 555 Query: 566 TKWELLDRKLIATAALYRTEVN 587 KW+L D + AA T+ N Sbjct: 556 GKWDLADGLALTAAAFQITKDN 577 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,900,587 Number of extensions: 80914 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 14 Length of query: 603 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 512 Effective length of database: 1,188,985 Effective search space: 608760320 Effective search space used: 608760320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)